Hb_000757_100

Information

Type -
Description -
Location Contig757: 99995-107553
Sequence    

Annotation

kegg
ID rcu:RCOM_1334240
description hypothetical protein
nr
ID XP_007020052.1
description SPla/RYanodine receptor domain-containing protein isoform 2 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FKT2
description SPla/RYanodine receptor domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_036425 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57064: 102242-107153 , PASA_asmbl_57065: 104292-107153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000757_100 0.0 - - SPla/RYanodine receptor domain-containing protein isoform 2 [Theobroma cacao]
2 Hb_024074_040 0.0949986128 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_006637_020 0.0980923799 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
4 Hb_010697_040 0.1038352347 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
5 Hb_002400_460 0.1067714366 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
6 Hb_002454_020 0.1179087419 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 9 [Vitis vinifera]
7 Hb_003430_060 0.1213512028 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
8 Hb_001205_110 0.1221017143 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
9 Hb_000363_240 0.1230068335 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
10 Hb_000608_260 0.1245428557 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
11 Hb_007508_080 0.1247662297 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
12 Hb_001054_030 0.1298509344 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
13 Hb_000563_640 0.1305035195 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
14 Hb_000487_380 0.1310270147 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
15 Hb_008103_020 0.1314825555 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
16 Hb_001674_030 0.1328617043 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
17 Hb_000260_600 0.1331469057 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004410_050 0.1331929459 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
19 Hb_000260_070 0.1343650723 - - kinase, putative [Ricinus communis]
20 Hb_000061_240 0.1347824007 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000757_100 Hb_000757_100 Hb_024074_040 Hb_024074_040 Hb_000757_100--Hb_024074_040 Hb_006637_020 Hb_006637_020 Hb_000757_100--Hb_006637_020 Hb_010697_040 Hb_010697_040 Hb_000757_100--Hb_010697_040 Hb_002400_460 Hb_002400_460 Hb_000757_100--Hb_002400_460 Hb_002454_020 Hb_002454_020 Hb_000757_100--Hb_002454_020 Hb_003430_060 Hb_003430_060 Hb_000757_100--Hb_003430_060 Hb_024074_040--Hb_002400_460 Hb_024074_040--Hb_006637_020 Hb_026228_020 Hb_026228_020 Hb_024074_040--Hb_026228_020 Hb_004410_050 Hb_004410_050 Hb_024074_040--Hb_004410_050 Hb_000260_600 Hb_000260_600 Hb_024074_040--Hb_000260_600 Hb_000723_220 Hb_000723_220 Hb_006637_020--Hb_000723_220 Hb_002311_100 Hb_002311_100 Hb_006637_020--Hb_002311_100 Hb_000696_050 Hb_000696_050 Hb_006637_020--Hb_000696_050 Hb_001195_470 Hb_001195_470 Hb_006637_020--Hb_001195_470 Hb_006637_020--Hb_004410_050 Hb_000139_130 Hb_000139_130 Hb_010697_040--Hb_000139_130 Hb_008253_020 Hb_008253_020 Hb_010697_040--Hb_008253_020 Hb_007508_080 Hb_007508_080 Hb_010697_040--Hb_007508_080 Hb_001205_110 Hb_001205_110 Hb_010697_040--Hb_001205_110 Hb_000046_070 Hb_000046_070 Hb_010697_040--Hb_000046_070 Hb_010712_090 Hb_010712_090 Hb_010697_040--Hb_010712_090 Hb_000061_240 Hb_000061_240 Hb_002400_460--Hb_000061_240 Hb_000174_270 Hb_000174_270 Hb_002400_460--Hb_000174_270 Hb_000291_150 Hb_000291_150 Hb_002400_460--Hb_000291_150 Hb_004725_050 Hb_004725_050 Hb_002400_460--Hb_004725_050 Hb_000037_190 Hb_000037_190 Hb_002400_460--Hb_000037_190 Hb_001357_270 Hb_001357_270 Hb_002454_020--Hb_001357_270 Hb_000922_370 Hb_000922_370 Hb_002454_020--Hb_000922_370 Hb_000318_510 Hb_000318_510 Hb_002454_020--Hb_000318_510 Hb_000347_180 Hb_000347_180 Hb_002454_020--Hb_000347_180 Hb_056196_050 Hb_056196_050 Hb_002454_020--Hb_056196_050 Hb_000600_070 Hb_000600_070 Hb_002454_020--Hb_000600_070 Hb_003430_060--Hb_007508_080 Hb_005321_020 Hb_005321_020 Hb_003430_060--Hb_005321_020 Hb_000574_100 Hb_000574_100 Hb_003430_060--Hb_000574_100 Hb_002111_070 Hb_002111_070 Hb_003430_060--Hb_002111_070 Hb_003430_060--Hb_010697_040 Hb_000563_640 Hb_000563_640 Hb_003430_060--Hb_000563_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3954 24.977 3.79181 21.7503 14.1777 19.8387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.086 5.18495 10.519 6.97359 14.7236

CAGE analysis