Hb_000757_130

Information

Type -
Description -
Location Contig757: 209443-220691
Sequence    

Annotation

kegg
ID rcu:RCOM_1147840
description hypothetical protein
nr
ID XP_002533585.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID B9T5R6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1147840 PE=4 SV=1
Gene Ontology
ID GO:0016757
description duf246 domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57068: 209700-220945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000757_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_029253_010 0.0960872292 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
3 Hb_000922_320 0.1155598447 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
4 Hb_000589_170 0.1168690332 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
5 Hb_001155_050 0.1216421947 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
6 Hb_004679_040 0.1266951516 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
7 Hb_002374_270 0.127363604 - - conserved hypothetical protein [Ricinus communis]
8 Hb_091318_010 0.1280457507 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
9 Hb_003740_020 0.1288372032 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_015778_040 0.1294398882 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
11 Hb_005357_110 0.1294887365 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
12 Hb_010534_020 0.1329251506 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
13 Hb_054865_050 0.1369871305 - - calcium-dependent protein kinase, putative [Ricinus communis]
14 Hb_005271_140 0.1371757346 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
15 Hb_001114_170 0.1398092952 - - conserved hypothetical protein [Ricinus communis]
16 Hb_013405_070 0.1407878947 - - ferric-chelate reductase, putative [Ricinus communis]
17 Hb_002249_170 0.1415596067 - - copine, putative [Ricinus communis]
18 Hb_011671_340 0.1428218789 - - small GTPase [Hevea brasiliensis]
19 Hb_012762_040 0.1428974338 - - big map kinase/bmk, putative [Ricinus communis]
20 Hb_001377_530 0.1436616129 - - NC domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000757_130 Hb_000757_130 Hb_029253_010 Hb_029253_010 Hb_000757_130--Hb_029253_010 Hb_000922_320 Hb_000922_320 Hb_000757_130--Hb_000922_320 Hb_000589_170 Hb_000589_170 Hb_000757_130--Hb_000589_170 Hb_001155_050 Hb_001155_050 Hb_000757_130--Hb_001155_050 Hb_004679_040 Hb_004679_040 Hb_000757_130--Hb_004679_040 Hb_002374_270 Hb_002374_270 Hb_000757_130--Hb_002374_270 Hb_005357_110 Hb_005357_110 Hb_029253_010--Hb_005357_110 Hb_003740_020 Hb_003740_020 Hb_029253_010--Hb_003740_020 Hb_000032_410 Hb_000032_410 Hb_029253_010--Hb_000032_410 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_029253_010--Hb_002374_270 Hb_000922_320--Hb_029253_010 Hb_000000_480 Hb_000000_480 Hb_000922_320--Hb_000000_480 Hb_002235_060 Hb_002235_060 Hb_000922_320--Hb_002235_060 Hb_002325_060 Hb_002325_060 Hb_000922_320--Hb_002325_060 Hb_012762_040 Hb_012762_040 Hb_000922_320--Hb_012762_040 Hb_000098_180 Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_013405_070 Hb_013405_070 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_011671_340 Hb_011671_340 Hb_001155_050--Hb_011671_340 Hb_001155_050--Hb_015778_040 Hb_007426_220 Hb_007426_220 Hb_001155_050--Hb_007426_220 Hb_000818_120 Hb_000818_120 Hb_001155_050--Hb_000818_120 Hb_001155_050--Hb_000589_170 Hb_001155_050--Hb_029253_010 Hb_004679_040--Hb_091318_010 Hb_004679_040--Hb_001155_050 Hb_054865_050 Hb_054865_050 Hb_004679_040--Hb_054865_050 Hb_004679_040--Hb_000000_480 Hb_002249_170 Hb_002249_170 Hb_004679_040--Hb_002249_170 Hb_002374_270--Hb_002235_060 Hb_000940_210 Hb_000940_210 Hb_002374_270--Hb_000940_210 Hb_003964_080 Hb_003964_080 Hb_002374_270--Hb_003964_080 Hb_003894_030 Hb_003894_030 Hb_002374_270--Hb_003894_030 Hb_002374_270--Hb_005357_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74957 5.90051 14.3727 10.83 0.391518 0.621033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.81336 2.96949 0.8188 3.73078 5.589

CAGE analysis