Hb_000758_030

Information

Type transcription factor
Description TF Family: ERF
Location Contig758: 26692-27246
Sequence    

Annotation

kegg
ID rcu:RCOM_1012500
description Ethylene-responsive transcription factor, putative
nr
ID XP_002522517.1
description Ethylene-responsive transcription factor, putative [Ricinus communis]
swissprot
ID O04681
description Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1
trembl
ID B9S948
description Ethylene-responsive transcription factor, putative OS=Ricinus communis GN=RCOM_1012500 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pathogenesis-related genes transcriptional activator pti5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57155: 26929-27489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000758_030 0.0 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
2 Hb_002110_270 0.0611598576 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
3 Hb_008225_080 0.0625543542 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
4 Hb_006006_070 0.0730192765 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_076895_020 0.0769433826 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
6 Hb_000976_020 0.0831120025 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
7 Hb_000539_080 0.0930277164 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
8 Hb_000984_080 0.0978558915 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
9 Hb_000567_310 0.0999396115 - - Miraculin precursor, putative [Ricinus communis]
10 Hb_000441_170 0.0999857745 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
11 Hb_002965_020 0.1028290395 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
12 Hb_003052_070 0.1043623508 - - PREDICTED: peroxidase 11 [Jatropha curcas]
13 Hb_002900_070 0.1066754384 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007875_070 0.1069240743 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
15 Hb_027288_010 0.108282696 - - mutt domain protein, putative [Ricinus communis]
16 Hb_000237_150 0.1118321603 - - Epoxide hydrolase 2 [Morus notabilis]
17 Hb_002232_370 0.1119594204 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
18 Hb_008406_010 0.1143564347 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
19 Hb_001173_050 0.114720365 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
20 Hb_161393_010 0.1161055198 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000758_030 Hb_000758_030 Hb_002110_270 Hb_002110_270 Hb_000758_030--Hb_002110_270 Hb_008225_080 Hb_008225_080 Hb_000758_030--Hb_008225_080 Hb_006006_070 Hb_006006_070 Hb_000758_030--Hb_006006_070 Hb_076895_020 Hb_076895_020 Hb_000758_030--Hb_076895_020 Hb_000976_020 Hb_000976_020 Hb_000758_030--Hb_000976_020 Hb_000539_080 Hb_000539_080 Hb_000758_030--Hb_000539_080 Hb_002110_270--Hb_006006_070 Hb_002110_270--Hb_076895_020 Hb_002110_270--Hb_000539_080 Hb_000984_080 Hb_000984_080 Hb_002110_270--Hb_000984_080 Hb_002900_070 Hb_002900_070 Hb_002110_270--Hb_002900_070 Hb_007875_070 Hb_007875_070 Hb_008225_080--Hb_007875_070 Hb_008225_080--Hb_000976_020 Hb_008225_080--Hb_000984_080 Hb_008225_080--Hb_002110_270 Hb_008225_080--Hb_006006_070 Hb_006006_070--Hb_076895_020 Hb_002232_400 Hb_002232_400 Hb_006006_070--Hb_002232_400 Hb_006006_070--Hb_000539_080 Hb_000441_170 Hb_000441_170 Hb_006006_070--Hb_000441_170 Hb_076895_020--Hb_000539_080 Hb_027141_010 Hb_027141_010 Hb_076895_020--Hb_027141_010 Hb_076895_020--Hb_000984_080 Hb_001357_260 Hb_001357_260 Hb_000976_020--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_000976_020--Hb_000189_260 Hb_002965_020 Hb_002965_020 Hb_000976_020--Hb_002965_020 Hb_020332_040 Hb_020332_040 Hb_000976_020--Hb_020332_040 Hb_000081_020 Hb_000081_020 Hb_000539_080--Hb_000081_020 Hb_000948_070 Hb_000948_070 Hb_000539_080--Hb_000948_070 Hb_000539_080--Hb_027141_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.42346 1.89821 3.11396 0 0.0436002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113652 0 0 33.1666 0.682105

CAGE analysis