Hb_000760_090

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig760: 168053-168649
Sequence    

Annotation

kegg
ID vvi:100855401
description nuclear transcription factor Y subunit B-6
nr
ID XP_003635503.1
description PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
swissprot
ID Q84W66
description Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2
trembl
ID D7SZ49
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0956g00020 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclear transcription factor y subunit b-6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57274: 168283-168593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000760_090 0.0 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
2 Hb_005065_090 0.0002412833 - - zinc/iron transporter, putative [Ricinus communis]
3 Hb_001488_170 0.0034526346 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
4 Hb_001946_090 0.0053069294 - - -
5 Hb_001645_080 0.0054508964 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
6 Hb_005663_020 0.0059794164 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
7 Hb_010543_010 0.0063498796 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
8 Hb_000152_690 0.009101539 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
9 Hb_000053_140 0.0100557332 - - conserved hypothetical protein [Ricinus communis]
10 Hb_102933_010 0.0142719028 - - Pectate lyase precursor, putative [Ricinus communis]
11 Hb_004092_020 0.0196313273 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
12 Hb_003792_010 0.0197555092 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002284_140 0.0200283763 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
14 Hb_002254_020 0.0215036625 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
15 Hb_001377_140 0.0239745558 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
16 Hb_000556_210 0.025126386 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
17 Hb_002106_020 0.0277120087 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
18 Hb_183658_010 0.0306654452 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_151697_010 0.0317694641 - - clathrin assembly protein, putative [Ricinus communis]
20 Hb_009711_060 0.032030888 - - -

Gene co-expression network

sample Hb_000760_090 Hb_000760_090 Hb_005065_090 Hb_005065_090 Hb_000760_090--Hb_005065_090 Hb_001488_170 Hb_001488_170 Hb_000760_090--Hb_001488_170 Hb_001946_090 Hb_001946_090 Hb_000760_090--Hb_001946_090 Hb_001645_080 Hb_001645_080 Hb_000760_090--Hb_001645_080 Hb_005663_020 Hb_005663_020 Hb_000760_090--Hb_005663_020 Hb_010543_010 Hb_010543_010 Hb_000760_090--Hb_010543_010 Hb_005065_090--Hb_001488_170 Hb_005065_090--Hb_001946_090 Hb_005065_090--Hb_001645_080 Hb_005065_090--Hb_010543_010 Hb_005065_090--Hb_005663_020 Hb_001488_170--Hb_001645_080 Hb_001488_170--Hb_005663_020 Hb_000053_140 Hb_000053_140 Hb_001488_170--Hb_000053_140 Hb_001488_170--Hb_001946_090 Hb_001946_090--Hb_010543_010 Hb_000152_690 Hb_000152_690 Hb_001946_090--Hb_000152_690 Hb_102933_010 Hb_102933_010 Hb_001946_090--Hb_102933_010 Hb_001645_080--Hb_005663_020 Hb_001645_080--Hb_000053_140 Hb_001645_080--Hb_001946_090 Hb_005663_020--Hb_000053_140 Hb_005663_020--Hb_001946_090 Hb_010543_010--Hb_000152_690 Hb_010543_010--Hb_102933_010 Hb_010543_010--Hb_001488_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.1236 1.82025 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis