Hb_000762_050

Information

Type -
Description -
Location Contig762: 55666-58370
Sequence    

Annotation

kegg
ID rcu:RCOM_1095240
description carbonic anhydrase, putative (EC:4.2.1.1)
nr
ID XP_012081520.1
description PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
swissprot
ID P27141
description Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A067LLS5
description Carbonic anhydrase OS=Jatropha curcas GN=JCGZ_09588 PE=3 SV=1
Gene Ontology
ID GO:0004089
description carbonic anhydrase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57300: 55618-58591
cDNA
(Sanger)
(ID:Location)		 010_J03.ab1: 55660-57803 , 026_B24.ab1: 55618-57640 , 033_N12.ab1: 55660-57803 , 034_A13.ab1: 55660-58211

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000762_050 0.0 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
2 Hb_000003_530 0.0251658585 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
3 Hb_004116_030 0.0320861883 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
4 Hb_013818_020 0.0334890877 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
5 Hb_016334_010 0.0379589249 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
6 Hb_002161_010 0.0385337814 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
7 Hb_000282_110 0.0443165067 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
8 Hb_008725_280 0.0444522892 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
9 Hb_001038_020 0.0466270729 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
10 Hb_007416_250 0.04939457 - - -
11 Hb_013405_240 0.0515749133 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
12 Hb_000245_090 0.0561955758 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
13 Hb_003653_030 0.0589262169 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_000029_150 0.0638993551 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000398_110 0.0655094712 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
16 Hb_000243_190 0.06558784 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
17 Hb_000083_010 0.0665609023 - - -
18 Hb_003208_010 0.0672596739 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_132840_050 0.0675656224 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
20 Hb_032631_060 0.0692725502 - - Myosin heavy chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000762_050 Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_000762_050--Hb_000003_530 Hb_004116_030 Hb_004116_030 Hb_000762_050--Hb_004116_030 Hb_013818_020 Hb_013818_020 Hb_000762_050--Hb_013818_020 Hb_016334_010 Hb_016334_010 Hb_000762_050--Hb_016334_010 Hb_002161_010 Hb_002161_010 Hb_000762_050--Hb_002161_010 Hb_000282_110 Hb_000282_110 Hb_000762_050--Hb_000282_110 Hb_000003_530--Hb_002161_010 Hb_008725_280 Hb_008725_280 Hb_000003_530--Hb_008725_280 Hb_000003_530--Hb_004116_030 Hb_000003_530--Hb_016334_010 Hb_000245_090 Hb_000245_090 Hb_000003_530--Hb_000245_090 Hb_004116_030--Hb_016334_010 Hb_004116_030--Hb_002161_010 Hb_004116_030--Hb_008725_280 Hb_003653_030 Hb_003653_030 Hb_004116_030--Hb_003653_030 Hb_013818_020--Hb_000282_110 Hb_007416_250 Hb_007416_250 Hb_013818_020--Hb_007416_250 Hb_013405_240 Hb_013405_240 Hb_013818_020--Hb_013405_240 Hb_013818_020--Hb_000003_530 Hb_003208_010 Hb_003208_010 Hb_013818_020--Hb_003208_010 Hb_132840_050 Hb_132840_050 Hb_016334_010--Hb_132840_050 Hb_000243_190 Hb_000243_190 Hb_016334_010--Hb_000243_190 Hb_016334_010--Hb_008725_280 Hb_002161_010--Hb_008725_280 Hb_002161_010--Hb_000245_090 Hb_004611_010 Hb_004611_010 Hb_002161_010--Hb_004611_010 Hb_001038_020 Hb_001038_020 Hb_002161_010--Hb_001038_020 Hb_000282_110--Hb_007416_250 Hb_000282_110--Hb_013405_240 Hb_000282_110--Hb_003208_010 Hb_003251_010 Hb_003251_010 Hb_000282_110--Hb_003251_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0379268 511.55 157.741 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.3547 0.737614 0 0 2174.26

CAGE analysis