Hb_000768_050

Information

Type -
Description -
Location Contig768: 46139-49478
Sequence    

Annotation

kegg
ID rcu:RCOM_0845740
description hypothetical protein
nr
ID XP_002530963.1
description hypothetical protein RCOM_0845740 [Ricinus communis]
swissprot
ID Q9ZVC9
description Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2
trembl
ID B9SY94
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0845740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57491: 46117-49474 , PASA_asmbl_57492: 46494-49467
cDNA
(Sanger)
(ID:Location)		 016_N15.ab1: 46123-48393 , 024_P23.ab1: 46123-48361 , 044_M08.ab1: 46117-49187

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_050 0.0 - - hypothetical protein RCOM_0845740 [Ricinus communis]
2 Hb_010449_020 0.0729641156 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
3 Hb_002495_070 0.0769802771 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
4 Hb_003106_070 0.0775698638 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
5 Hb_000265_150 0.0791060765 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
6 Hb_003688_100 0.0797451912 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
7 Hb_004722_060 0.080302737 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
8 Hb_005489_130 0.0864174608 - - calmodulin, putative [Ricinus communis]
9 Hb_010883_210 0.0911319838 - - PREDICTED: selenoprotein K [Jatropha curcas]
10 Hb_011794_090 0.0941777404 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
11 Hb_000373_270 0.097040742 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
12 Hb_007919_060 0.098388333 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
13 Hb_002272_250 0.0988179333 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_003185_020 0.0997201002 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
15 Hb_002043_180 0.1011691418 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
16 Hb_002681_040 0.1028436085 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
17 Hb_019962_030 0.1029894733 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
18 Hb_001158_040 0.1035491702 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
19 Hb_004109_200 0.1038494969 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
20 Hb_000085_270 0.1048398357 - - PREDICTED: pirin-like protein [Malus domestica]

Gene co-expression network

sample Hb_000768_050 Hb_000768_050 Hb_010449_020 Hb_010449_020 Hb_000768_050--Hb_010449_020 Hb_002495_070 Hb_002495_070 Hb_000768_050--Hb_002495_070 Hb_003106_070 Hb_003106_070 Hb_000768_050--Hb_003106_070 Hb_000265_150 Hb_000265_150 Hb_000768_050--Hb_000265_150 Hb_003688_100 Hb_003688_100 Hb_000768_050--Hb_003688_100 Hb_004722_060 Hb_004722_060 Hb_000768_050--Hb_004722_060 Hb_003185_020 Hb_003185_020 Hb_010449_020--Hb_003185_020 Hb_000392_270 Hb_000392_270 Hb_010449_020--Hb_000392_270 Hb_010449_020--Hb_003688_100 Hb_005489_130 Hb_005489_130 Hb_010449_020--Hb_005489_130 Hb_010449_020--Hb_004722_060 Hb_002495_070--Hb_004722_060 Hb_000621_080 Hb_000621_080 Hb_002495_070--Hb_000621_080 Hb_002495_070--Hb_005489_130 Hb_002150_080 Hb_002150_080 Hb_002495_070--Hb_002150_080 Hb_002495_070--Hb_010449_020 Hb_010883_210 Hb_010883_210 Hb_003106_070--Hb_010883_210 Hb_004920_040 Hb_004920_040 Hb_003106_070--Hb_004920_040 Hb_003106_070--Hb_002495_070 Hb_003106_070--Hb_010449_020 Hb_003106_070--Hb_003185_020 Hb_000205_120 Hb_000205_120 Hb_000265_150--Hb_000205_120 Hb_012305_070 Hb_012305_070 Hb_000265_150--Hb_012305_070 Hb_000265_150--Hb_004722_060 Hb_000529_080 Hb_000529_080 Hb_000265_150--Hb_000529_080 Hb_008406_160 Hb_008406_160 Hb_000265_150--Hb_008406_160 Hb_011794_090 Hb_011794_090 Hb_003688_100--Hb_011794_090 Hb_001514_020 Hb_001514_020 Hb_003688_100--Hb_001514_020 Hb_003688_100--Hb_004722_060 Hb_011537_010 Hb_011537_010 Hb_003688_100--Hb_011537_010 Hb_003688_100--Hb_005489_130 Hb_019962_030 Hb_019962_030 Hb_004722_060--Hb_019962_030 Hb_000538_020 Hb_000538_020 Hb_004722_060--Hb_000538_020 Hb_004722_060--Hb_000621_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.7687 29.2842 17.3334 14.2485 52.1682 48.9476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.3697 55.3916 25.293 19.3089 6.13665

CAGE analysis