Hb_000768_110

Information

Type -
Description -
Location Contig768: 110461-116090
Sequence    

Annotation

kegg
ID rcu:RCOM_1515380
description Heterochromatin protein, putative
nr
ID XP_012070324.1
description PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
swissprot
ID Q946J8
description Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana GN=LHP1 PE=1 SV=2
trembl
ID A0A067KTQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02631 PE=4 SV=1
Gene Ontology
ID GO:0005634
description chromo domain-containing protein lhp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57513: 116572-124230 , PASA_asmbl_57514: 116593-124136
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_110 0.0 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
2 Hb_000567_010 0.0605328711 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
3 Hb_008159_020 0.0613089474 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
4 Hb_000160_040 0.0631533275 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
5 Hb_010193_050 0.0635905414 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005914_060 0.0647618317 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
7 Hb_000173_510 0.065025328 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
8 Hb_004370_030 0.066651726 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
9 Hb_003935_030 0.0669747612 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
10 Hb_002044_060 0.0698841545 - - elongation factor ts, putative [Ricinus communis]
11 Hb_006252_040 0.0704851397 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
12 Hb_004450_010 0.0705184043 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
13 Hb_000976_320 0.0710700637 - - UPF0061 protein azo1574 [Morus notabilis]
14 Hb_023386_040 0.0724256536 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
15 Hb_002304_090 0.0727971494 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
16 Hb_000521_260 0.0743767488 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
17 Hb_000179_030 0.0744326092 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
18 Hb_003428_070 0.0747499994 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
19 Hb_000510_310 0.0749674262 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
20 Hb_009620_040 0.0780683285 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000768_110 Hb_000768_110 Hb_000567_010 Hb_000567_010 Hb_000768_110--Hb_000567_010 Hb_008159_020 Hb_008159_020 Hb_000768_110--Hb_008159_020 Hb_000160_040 Hb_000160_040 Hb_000768_110--Hb_000160_040 Hb_010193_050 Hb_010193_050 Hb_000768_110--Hb_010193_050 Hb_005914_060 Hb_005914_060 Hb_000768_110--Hb_005914_060 Hb_000173_510 Hb_000173_510 Hb_000768_110--Hb_000173_510 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_000567_010--Hb_010193_050 Hb_005494_020 Hb_005494_020 Hb_000567_010--Hb_005494_020 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_004235_080 Hb_004235_080 Hb_008159_020--Hb_004235_080 Hb_000179_030 Hb_000179_030 Hb_008159_020--Hb_000179_030 Hb_006252_040 Hb_006252_040 Hb_008159_020--Hb_006252_040 Hb_002823_030 Hb_002823_030 Hb_008159_020--Hb_002823_030 Hb_008159_020--Hb_005914_060 Hb_106371_010 Hb_106371_010 Hb_000160_040--Hb_106371_010 Hb_009627_010 Hb_009627_010 Hb_000160_040--Hb_009627_010 Hb_009620_040 Hb_009620_040 Hb_000160_040--Hb_009620_040 Hb_000160_040--Hb_000173_510 Hb_003090_080 Hb_003090_080 Hb_000160_040--Hb_003090_080 Hb_010193_050--Hb_003124_130 Hb_003605_130 Hb_003605_130 Hb_010193_050--Hb_003605_130 Hb_000329_130 Hb_000329_130 Hb_010193_050--Hb_000329_130 Hb_000645_120 Hb_000645_120 Hb_010193_050--Hb_000645_120 Hb_023386_040 Hb_023386_040 Hb_005914_060--Hb_023386_040 Hb_000926_190 Hb_000926_190 Hb_005914_060--Hb_000926_190 Hb_005914_060--Hb_000179_030 Hb_142439_010 Hb_142439_010 Hb_005914_060--Hb_142439_010 Hb_003428_070 Hb_003428_070 Hb_005914_060--Hb_003428_070 Hb_000173_510--Hb_003428_070 Hb_000173_510--Hb_000567_010 Hb_000283_070 Hb_000283_070 Hb_000173_510--Hb_000283_070 Hb_000059_150 Hb_000059_150 Hb_000173_510--Hb_000059_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4028 21.1783 13.2065 13.1671 31.3556 41.0343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1144 19.163 15.3889 22.8649 9.27506

CAGE analysis