Hb_000768_120

Information

Type -
Description -
Location Contig768: 116558-124230
Sequence    

Annotation

kegg
ID rcu:RCOM_1515490
description RNA polymerase sigma factor rpoD1, putative
nr
ID XP_012070322.1
description PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
swissprot
ID O22056
description RNA polymerase sigma factor sigB OS=Arabidopsis thaliana GN=SIGB PE=2 SV=2
trembl
ID A0A067L532
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02630 PE=4 SV=1
Gene Ontology
ID GO:0003677
description rna polymerase sigma factor sigb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57513: 116572-124230 , PASA_asmbl_57514: 116593-124136
cDNA
(Sanger)
(ID:Location)		 005_B20.ab1: 121073-124136 , 013_K22.ab1: 121181-124136 , 016_O04.ab1: 121145-124136 , 020_D02.ab1: 121173-124230 , 034_A01.ab1: 121050-124136 , 040_N15.ab1: 121125-124136 , 048_O21.ab1: 121273-124230 , 049_P02.ab1: 121186-124136

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_120 0.0 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
2 Hb_006681_020 0.0575673083 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
3 Hb_004855_070 0.081268506 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
4 Hb_007479_010 0.0825048992 - - Root phototropism protein, putative [Ricinus communis]
5 Hb_002495_090 0.0837018469 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
6 Hb_004208_090 0.0909381156 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
7 Hb_001999_260 0.095432558 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
8 Hb_004117_150 0.0970086393 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
9 Hb_000062_480 0.1054624088 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
10 Hb_137216_010 0.1057235942 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
11 Hb_005488_190 0.1078752529 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
12 Hb_000134_040 0.1122978007 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
13 Hb_006583_030 0.1152484948 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
14 Hb_004007_170 0.1228471281 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_000009_510 0.1253218307 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
16 Hb_000302_230 0.131654202 - - conserved hypothetical protein [Ricinus communis]
17 Hb_126933_020 0.1358651695 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
18 Hb_000934_260 0.1412211758 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_000544_080 0.1417033408 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
20 Hb_000703_070 0.1429529497 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000768_120 Hb_000768_120 Hb_006681_020 Hb_006681_020 Hb_000768_120--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_000768_120--Hb_004855_070 Hb_007479_010 Hb_007479_010 Hb_000768_120--Hb_007479_010 Hb_002495_090 Hb_002495_090 Hb_000768_120--Hb_002495_090 Hb_004208_090 Hb_004208_090 Hb_000768_120--Hb_004208_090 Hb_001999_260 Hb_001999_260 Hb_000768_120--Hb_001999_260 Hb_006681_020--Hb_001999_260 Hb_006681_020--Hb_004855_070 Hb_006583_030 Hb_006583_030 Hb_006681_020--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_006681_020--Hb_004117_150 Hb_000009_510 Hb_000009_510 Hb_006681_020--Hb_000009_510 Hb_004855_070--Hb_004208_090 Hb_004855_070--Hb_006583_030 Hb_004855_070--Hb_001999_260 Hb_000134_040 Hb_000134_040 Hb_004855_070--Hb_000134_040 Hb_007479_010--Hb_002495_090 Hb_007479_010--Hb_000134_040 Hb_007479_010--Hb_004855_070 Hb_007479_010--Hb_006681_020 Hb_000932_110 Hb_000932_110 Hb_007479_010--Hb_000932_110 Hb_137216_010 Hb_137216_010 Hb_002495_090--Hb_137216_010 Hb_002495_090--Hb_000134_040 Hb_002495_090--Hb_006681_020 Hb_005488_190 Hb_005488_190 Hb_002495_090--Hb_005488_190 Hb_004208_090--Hb_001999_260 Hb_000934_260 Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004208_090--Hb_004117_150 Hb_004208_090--Hb_006681_020 Hb_001999_260--Hb_006583_030 Hb_001999_260--Hb_004117_150 Hb_005000_060 Hb_005000_060 Hb_001999_260--Hb_005000_060 Hb_001999_260--Hb_000934_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39782 3.87218 58.369 12.26 3.9662 2.84207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20472 0.817188 0.745272 1.85838 44.686

CAGE analysis