Hb_000768_130

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig768: 131811-141580
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06780g
description POPTRDRAFT_730132; SWIB complex BAF60b domain-containing family protein
nr
ID XP_012070321.1
description PREDICTED: protein TRI1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L690
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02629 PE=4 SV=1
Gene Ontology
ID GO:0005515
description upstream activation factor subunit uaf30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57515: 131832-143468
cDNA
(Sanger)
(ID:Location)		 012_B12.ab1: 131832-143419 , 019_L09.ab1: 131832-143419

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_130 0.0 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
2 Hb_007313_080 0.0886145367 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
3 Hb_154141_030 0.0903053368 - - PREDICTED: histone H2AX [Populus euphratica]
4 Hb_000739_140 0.0927854822 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
5 Hb_000215_330 0.0976028002 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
6 Hb_003020_330 0.101099161 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
7 Hb_005306_070 0.1023120818 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
8 Hb_002838_030 0.102872138 - - 40S ribosomal protein S25A [Hevea brasiliensis]
9 Hb_000948_220 0.1047211178 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
10 Hb_000030_200 0.1053368681 - - PREDICTED: early nodulin-93-like [Populus euphratica]
11 Hb_000087_130 0.1059588435 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
12 Hb_002900_130 0.1103284721 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
13 Hb_003929_150 0.1105290247 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
14 Hb_009075_010 0.1118147105 - - 60S ribosomal protein L10B [Hevea brasiliensis]
15 Hb_002081_030 0.1125174231 - - unnamed protein product [Coffea canephora]
16 Hb_007120_090 0.1155663268 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
17 Hb_027684_020 0.1213257294 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
18 Hb_027472_160 0.1230288937 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
19 Hb_000997_120 0.1242900948 - - 40S ribosomal protein S15E [Hevea brasiliensis]
20 Hb_007245_080 0.1249352413 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]

Gene co-expression network

sample Hb_000768_130 Hb_000768_130 Hb_007313_080 Hb_007313_080 Hb_000768_130--Hb_007313_080 Hb_154141_030 Hb_154141_030 Hb_000768_130--Hb_154141_030 Hb_000739_140 Hb_000739_140 Hb_000768_130--Hb_000739_140 Hb_000215_330 Hb_000215_330 Hb_000768_130--Hb_000215_330 Hb_003020_330 Hb_003020_330 Hb_000768_130--Hb_003020_330 Hb_005306_070 Hb_005306_070 Hb_000768_130--Hb_005306_070 Hb_007313_080--Hb_003020_330 Hb_000454_180 Hb_000454_180 Hb_007313_080--Hb_000454_180 Hb_002900_130 Hb_002900_130 Hb_007313_080--Hb_002900_130 Hb_007313_080--Hb_154141_030 Hb_027472_160 Hb_027472_160 Hb_007313_080--Hb_027472_160 Hb_154141_030--Hb_002900_130 Hb_154141_030--Hb_003020_330 Hb_002811_090 Hb_002811_090 Hb_154141_030--Hb_002811_090 Hb_002838_030 Hb_002838_030 Hb_154141_030--Hb_002838_030 Hb_009075_010 Hb_009075_010 Hb_000739_140--Hb_009075_010 Hb_005054_260 Hb_005054_260 Hb_000739_140--Hb_005054_260 Hb_000739_140--Hb_005306_070 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_001410_060 Hb_001410_060 Hb_000739_140--Hb_001410_060 Hb_000215_330--Hb_005306_070 Hb_000107_300 Hb_000107_300 Hb_000215_330--Hb_000107_300 Hb_002314_010 Hb_002314_010 Hb_000215_330--Hb_002314_010 Hb_003376_190 Hb_003376_190 Hb_000215_330--Hb_003376_190 Hb_003494_050 Hb_003494_050 Hb_000215_330--Hb_003494_050 Hb_002303_060 Hb_002303_060 Hb_000215_330--Hb_002303_060 Hb_003020_330--Hb_002838_030 Hb_007120_090 Hb_007120_090 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_000110_170 Hb_000110_170 Hb_003020_330--Hb_000110_170 Hb_003020_330--Hb_027472_160 Hb_005306_070--Hb_000107_300 Hb_005306_070--Hb_001410_060 Hb_005306_070--Hb_003494_050 Hb_005269_080 Hb_005269_080 Hb_005306_070--Hb_005269_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.51669 4.90511 13.4942 22.852 2.38776 5.82886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0418 56.3105 13.1548 13.1879 7.26907

CAGE analysis