Hb_000768_140

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig768: 142651-145725
Sequence    

Annotation

kegg
ID rcu:RCOM_1515620
description tRNA (guanine-n(7)-)-methyltransferase, putative (EC:2.1.1.33)
nr
ID XP_002523975.1
description tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
swissprot
ID Q2JRH1
description tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) GN=trmB PE=3 SV=1
trembl
ID B9SDA6
description tRNA (Guanine-n(7)-)-methyltransferase, putative OS=Ricinus communis GN=RCOM_1515620 PE=4 SV=1
Gene Ontology
ID GO:0005515
description trna (guanine-n -)-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57515: 131832-143468
cDNA
(Sanger)
(ID:Location)		 012_B12.ab1: 131832-143419 , 019_L09.ab1: 131832-143419

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_140 0.0 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
2 Hb_020805_060 0.1119194716 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
3 Hb_001164_030 0.1553712909 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
4 Hb_001016_080 0.1583666345 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
5 Hb_002243_060 0.1743739839 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
6 Hb_000189_540 0.1827897812 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
7 Hb_000291_270 0.1867692796 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
8 Hb_000011_300 0.186787726 - - PREDICTED: proteasome subunit alpha type-5 isoform X1 [Gossypium raimondii]
9 Hb_000465_510 0.1896797434 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
10 Hb_000483_090 0.1900879599 - - -
11 Hb_000120_150 0.191983478 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
12 Hb_004787_040 0.1925967289 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000768_130 0.1981121868 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
14 Hb_000270_740 0.1985247654 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
15 Hb_001322_070 0.199368139 - - protein with unknown function [Ricinus communis]
16 Hb_000031_080 0.2076059054 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
17 Hb_154141_030 0.2115793551 - - PREDICTED: histone H2AX [Populus euphratica]
18 Hb_002081_030 0.2126734116 - - unnamed protein product [Coffea canephora]
19 Hb_170426_010 0.2134795476 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
20 Hb_002900_130 0.2138690314 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_000768_140 Hb_000768_140 Hb_020805_060 Hb_020805_060 Hb_000768_140--Hb_020805_060 Hb_001164_030 Hb_001164_030 Hb_000768_140--Hb_001164_030 Hb_001016_080 Hb_001016_080 Hb_000768_140--Hb_001016_080 Hb_002243_060 Hb_002243_060 Hb_000768_140--Hb_002243_060 Hb_000189_540 Hb_000189_540 Hb_000768_140--Hb_000189_540 Hb_000291_270 Hb_000291_270 Hb_000768_140--Hb_000291_270 Hb_020805_060--Hb_001164_030 Hb_000011_300 Hb_000011_300 Hb_020805_060--Hb_000011_300 Hb_020805_060--Hb_000189_540 Hb_170426_010 Hb_170426_010 Hb_020805_060--Hb_170426_010 Hb_004787_040 Hb_004787_040 Hb_020805_060--Hb_004787_040 Hb_000483_090 Hb_000483_090 Hb_001164_030--Hb_000483_090 Hb_001164_030--Hb_000291_270 Hb_091889_010 Hb_091889_010 Hb_001164_030--Hb_091889_010 Hb_000120_150 Hb_000120_150 Hb_001164_030--Hb_000120_150 Hb_001016_080--Hb_000291_270 Hb_002900_130 Hb_002900_130 Hb_001016_080--Hb_002900_130 Hb_001016_080--Hb_020805_060 Hb_001016_080--Hb_000483_090 Hb_154141_030 Hb_154141_030 Hb_001016_080--Hb_154141_030 Hb_007254_080 Hb_007254_080 Hb_002243_060--Hb_007254_080 Hb_000110_170 Hb_000110_170 Hb_002243_060--Hb_000110_170 Hb_002081_030 Hb_002081_030 Hb_002243_060--Hb_002081_030 Hb_002042_080 Hb_002042_080 Hb_002243_060--Hb_002042_080 Hb_000178_120 Hb_000178_120 Hb_002243_060--Hb_000178_120 Hb_147752_010 Hb_147752_010 Hb_002243_060--Hb_147752_010 Hb_001322_070 Hb_001322_070 Hb_000189_540--Hb_001322_070 Hb_002686_180 Hb_002686_180 Hb_000189_540--Hb_002686_180 Hb_098315_020 Hb_098315_020 Hb_000189_540--Hb_098315_020 Hb_000155_090 Hb_000155_090 Hb_000189_540--Hb_000155_090 Hb_000152_210 Hb_000152_210 Hb_000189_540--Hb_000152_210 Hb_003540_200 Hb_003540_200 Hb_000291_270--Hb_003540_200 Hb_000291_270--Hb_154141_030 Hb_000291_270--Hb_000483_090 Hb_003020_330 Hb_003020_330 Hb_000291_270--Hb_003020_330 Hb_025645_030 Hb_025645_030 Hb_000291_270--Hb_025645_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.28806 0.639911 0.835574 2.5927 0.0483481 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.56495 5.18247 0.91209 0.361785 0.672213

CAGE analysis