Hb_000768_160

Information

Type -
Description -
Location Contig768: 163324-168198
Sequence    

Annotation

kegg
ID rcu:RCOM_1515750
description hypothetical protein
nr
ID XP_012070316.1
description PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L526
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02625 PE=4 SV=1
Gene Ontology
ID GO:0008233
description nuclear factor 1 a-type isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57520: 163321-168163
cDNA
(Sanger)
(ID:Location)		 041_I22.ab1: 163321-163599

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_160 0.0 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
2 Hb_002928_200 0.0877371338 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
3 Hb_055062_040 0.0963070473 - - ceramidase, putative [Ricinus communis]
4 Hb_002093_060 0.0989226957 - - phosphoprotein phosphatase, putative [Ricinus communis]
5 Hb_009615_060 0.1001227902 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
6 Hb_002631_130 0.1009431456 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
7 Hb_084670_010 0.1037657332 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002232_490 0.1097558137 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
9 Hb_000896_050 0.1102990539 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
10 Hb_000159_120 0.1110661834 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
11 Hb_002301_100 0.1127540423 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
12 Hb_001493_150 0.1127549748 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
13 Hb_005648_010 0.1129499766 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
14 Hb_012678_020 0.1132342342 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
15 Hb_003159_050 0.1141910245 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_001226_130 0.1159190968 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
17 Hb_000649_060 0.1193861048 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
18 Hb_011537_060 0.1212469565 - - UPF0061 protein azo1574 [Morus notabilis]
19 Hb_001587_030 0.1228129258 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
20 Hb_002025_330 0.1233774228 - - peptide transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000768_160 Hb_000768_160 Hb_002928_200 Hb_002928_200 Hb_000768_160--Hb_002928_200 Hb_055062_040 Hb_055062_040 Hb_000768_160--Hb_055062_040 Hb_002093_060 Hb_002093_060 Hb_000768_160--Hb_002093_060 Hb_009615_060 Hb_009615_060 Hb_000768_160--Hb_009615_060 Hb_002631_130 Hb_002631_130 Hb_000768_160--Hb_002631_130 Hb_084670_010 Hb_084670_010 Hb_000768_160--Hb_084670_010 Hb_000406_150 Hb_000406_150 Hb_002928_200--Hb_000406_150 Hb_002928_200--Hb_002631_130 Hb_002477_040 Hb_002477_040 Hb_002928_200--Hb_002477_040 Hb_012678_020 Hb_012678_020 Hb_002928_200--Hb_012678_020 Hb_001006_270 Hb_001006_270 Hb_002928_200--Hb_001006_270 Hb_002025_330 Hb_002025_330 Hb_055062_040--Hb_002025_330 Hb_003280_020 Hb_003280_020 Hb_055062_040--Hb_003280_020 Hb_055062_040--Hb_084670_010 Hb_004048_120 Hb_004048_120 Hb_055062_040--Hb_004048_120 Hb_012733_070 Hb_012733_070 Hb_055062_040--Hb_012733_070 Hb_002749_060 Hb_002749_060 Hb_055062_040--Hb_002749_060 Hb_005648_010 Hb_005648_010 Hb_002093_060--Hb_005648_010 Hb_002301_100 Hb_002301_100 Hb_002093_060--Hb_002301_100 Hb_000120_370 Hb_000120_370 Hb_002093_060--Hb_000120_370 Hb_001957_010 Hb_001957_010 Hb_002093_060--Hb_001957_010 Hb_000115_150 Hb_000115_150 Hb_002093_060--Hb_000115_150 Hb_002093_060--Hb_012678_020 Hb_001493_150 Hb_001493_150 Hb_009615_060--Hb_001493_150 Hb_000548_070 Hb_000548_070 Hb_009615_060--Hb_000548_070 Hb_001728_140 Hb_001728_140 Hb_009615_060--Hb_001728_140 Hb_003159_050 Hb_003159_050 Hb_009615_060--Hb_003159_050 Hb_009615_060--Hb_002631_130 Hb_012393_030 Hb_012393_030 Hb_009615_060--Hb_012393_030 Hb_000197_190 Hb_000197_190 Hb_002631_130--Hb_000197_190 Hb_000494_030 Hb_000494_030 Hb_002631_130--Hb_000494_030 Hb_000683_050 Hb_000683_050 Hb_002631_130--Hb_000683_050 Hb_002631_130--Hb_000548_070 Hb_000358_050 Hb_000358_050 Hb_084670_010--Hb_000358_050 Hb_011537_060 Hb_011537_060 Hb_084670_010--Hb_011537_060 Hb_001159_010 Hb_001159_010 Hb_084670_010--Hb_001159_010 Hb_007558_100 Hb_007558_100 Hb_084670_010--Hb_007558_100 Hb_016347_010 Hb_016347_010 Hb_084670_010--Hb_016347_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29418 3.93108 6.67146 12.0959 5.19794 5.24068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.14532 4.80869 3.7552 18.9405 13.6762

CAGE analysis