Hb_000768_170

Information

Type -
Description -
Location Contig768: 168462-179677
Sequence    

Annotation

kegg
ID rcu:RCOM_1515760
description tubulin-specific chaperone A (tubulin-folding cofactor A) (cfa), putative
nr
ID KDP39604.1
description hypothetical protein JCGZ_02624 [Jatropha curcas]
swissprot
ID O04350
description Tubulin-folding cofactor A OS=Arabidopsis thaliana GN=TFCA PE=1 SV=2
trembl
ID A0A067L684
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02624 PE=4 SV=1
Gene Ontology
ID GO:0015631
description tubulin-folding cofactor a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57521: 168477-179954 , PASA_asmbl_57522: 172362-179975 , PASA_asmbl_57524: 178187-178587 , PASA_asmbl_57525: 179779-180086 , PASA_asmbl_57527: 180216-180573
cDNA
(Sanger)
(ID:Location)		 028_F22.ab1: 172362-179976

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_170 0.0 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
2 Hb_003020_020 0.0671362053 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
3 Hb_009694_010 0.0872422471 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005054_060 0.088131218 - - PREDICTED: syntaxin-81 [Jatropha curcas]
5 Hb_000347_540 0.0882343195 - - protein binding protein, putative [Ricinus communis]
6 Hb_001481_170 0.0887105295 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000690_160 0.0891929997 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
8 Hb_029142_060 0.0919132822 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
9 Hb_000866_010 0.0929175429 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004324_070 0.0937548624 - - protein phosphatase 2C [Hevea brasiliensis]
11 Hb_004096_090 0.0977223433 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
12 Hb_007389_010 0.0982601403 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
13 Hb_111985_050 0.0988392145 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
14 Hb_000008_470 0.0989031593 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
15 Hb_000416_040 0.1005345318 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
16 Hb_000815_320 0.1014535803 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
17 Hb_003683_050 0.1055099473 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
18 Hb_013726_020 0.1056866689 - - ara4-interacting protein, putative [Ricinus communis]
19 Hb_005186_050 0.1058766597 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
20 Hb_001662_070 0.1059809972 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]

Gene co-expression network

sample Hb_000768_170 Hb_000768_170 Hb_003020_020 Hb_003020_020 Hb_000768_170--Hb_003020_020 Hb_009694_010 Hb_009694_010 Hb_000768_170--Hb_009694_010 Hb_005054_060 Hb_005054_060 Hb_000768_170--Hb_005054_060 Hb_000347_540 Hb_000347_540 Hb_000768_170--Hb_000347_540 Hb_001481_170 Hb_001481_170 Hb_000768_170--Hb_001481_170 Hb_000690_160 Hb_000690_160 Hb_000768_170--Hb_000690_160 Hb_111985_050 Hb_111985_050 Hb_003020_020--Hb_111985_050 Hb_112798_030 Hb_112798_030 Hb_003020_020--Hb_112798_030 Hb_005186_050 Hb_005186_050 Hb_003020_020--Hb_005186_050 Hb_000251_070 Hb_000251_070 Hb_003020_020--Hb_000251_070 Hb_003020_020--Hb_000347_540 Hb_028227_020 Hb_028227_020 Hb_009694_010--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_004096_090 Hb_004096_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060 Hb_000815_320 Hb_000815_320 Hb_005054_060--Hb_000815_320 Hb_005054_060--Hb_004096_090 Hb_003057_090 Hb_003057_090 Hb_005054_060--Hb_003057_090 Hb_005054_060--Hb_009694_010 Hb_001821_010 Hb_001821_010 Hb_005054_060--Hb_001821_010 Hb_005054_060--Hb_000465_090 Hb_001579_030 Hb_001579_030 Hb_000347_540--Hb_001579_030 Hb_001662_070 Hb_001662_070 Hb_000347_540--Hb_001662_070 Hb_000347_540--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_000347_540--Hb_000787_050 Hb_004324_070 Hb_004324_070 Hb_000347_540--Hb_004324_070 Hb_025645_010 Hb_025645_010 Hb_000347_540--Hb_025645_010 Hb_003683_050 Hb_003683_050 Hb_001481_170--Hb_003683_050 Hb_001195_760 Hb_001195_760 Hb_001481_170--Hb_001195_760 Hb_001305_010 Hb_001305_010 Hb_001481_170--Hb_001305_010 Hb_000451_010 Hb_000451_010 Hb_001481_170--Hb_000451_010 Hb_012022_160 Hb_012022_160 Hb_001481_170--Hb_012022_160 Hb_000302_010 Hb_000302_010 Hb_001481_170--Hb_000302_010 Hb_000866_010 Hb_000866_010 Hb_000690_160--Hb_000866_010 Hb_000753_240 Hb_000753_240 Hb_000690_160--Hb_000753_240 Hb_075751_010 Hb_075751_010 Hb_000690_160--Hb_075751_010 Hb_006817_010 Hb_006817_010 Hb_000690_160--Hb_006817_010 Hb_004440_020 Hb_004440_020 Hb_000690_160--Hb_004440_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.662 8.52833 23.2466 16.7303 23.0709 23.3227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.271 32.1744 24.1449 4.61673 15.1791

CAGE analysis