Hb_000768_190

Information

Type -
Description -
Location Contig768: 202831-207498
Sequence    

Annotation

kegg
ID rcu:RCOM_1515790
description hypothetical protein
nr
ID XP_012070312.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9SDB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1515790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57536: 205011-207197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_190 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
2 Hb_064903_010 0.0664858511 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
3 Hb_000037_110 0.0717470913 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
4 Hb_003544_100 0.0801044549 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
5 Hb_007943_100 0.0820977683 - - unnamed protein product [Coffea canephora]
6 Hb_008595_010 0.0827099032 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
7 Hb_006915_060 0.0827221751 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
8 Hb_000021_040 0.0867690102 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
9 Hb_000010_180 0.0892647739 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
10 Hb_004218_240 0.090171528 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
11 Hb_006449_050 0.0915329053 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
12 Hb_003847_120 0.0923471404 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000951_110 0.0961534495 - - heat shock protein, putative [Ricinus communis]
14 Hb_000343_190 0.0962532538 - - PREDICTED: coatomer subunit beta'-2 isoform X1 [Jatropha curcas]
15 Hb_001473_090 0.0964690865 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
16 Hb_009411_010 0.0969901973 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
17 Hb_000300_580 0.0974306983 - - PREDICTED: importin-5-like [Jatropha curcas]
18 Hb_000441_180 0.0977325562 - - Early endosome antigen, putative [Ricinus communis]
19 Hb_009535_020 0.0980510272 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
20 Hb_000170_190 0.0992572846 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]

Gene co-expression network

sample Hb_000768_190 Hb_000768_190 Hb_064903_010 Hb_064903_010 Hb_000768_190--Hb_064903_010 Hb_000037_110 Hb_000037_110 Hb_000768_190--Hb_000037_110 Hb_003544_100 Hb_003544_100 Hb_000768_190--Hb_003544_100 Hb_007943_100 Hb_007943_100 Hb_000768_190--Hb_007943_100 Hb_008595_010 Hb_008595_010 Hb_000768_190--Hb_008595_010 Hb_006915_060 Hb_006915_060 Hb_000768_190--Hb_006915_060 Hb_111985_080 Hb_111985_080 Hb_064903_010--Hb_111985_080 Hb_002301_080 Hb_002301_080 Hb_064903_010--Hb_002301_080 Hb_003847_120 Hb_003847_120 Hb_064903_010--Hb_003847_120 Hb_000832_130 Hb_000832_130 Hb_064903_010--Hb_000832_130 Hb_003044_020 Hb_003044_020 Hb_064903_010--Hb_003044_020 Hb_000021_040 Hb_000021_040 Hb_000037_110--Hb_000021_040 Hb_000037_110--Hb_008595_010 Hb_022250_110 Hb_022250_110 Hb_000037_110--Hb_022250_110 Hb_000029_320 Hb_000029_320 Hb_000037_110--Hb_000029_320 Hb_002070_070 Hb_002070_070 Hb_000037_110--Hb_002070_070 Hb_009411_010 Hb_009411_010 Hb_003544_100--Hb_009411_010 Hb_001599_030 Hb_001599_030 Hb_003544_100--Hb_001599_030 Hb_003938_080 Hb_003938_080 Hb_003544_100--Hb_003938_080 Hb_003544_100--Hb_006915_060 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_003216_080 Hb_003216_080 Hb_003544_100--Hb_003216_080 Hb_028639_010 Hb_028639_010 Hb_007943_100--Hb_028639_010 Hb_003001_150 Hb_003001_150 Hb_007943_100--Hb_003001_150 Hb_007943_100--Hb_000037_110 Hb_002150_030 Hb_002150_030 Hb_007943_100--Hb_002150_030 Hb_000059_150 Hb_000059_150 Hb_007943_100--Hb_000059_150 Hb_001300_070 Hb_001300_070 Hb_008595_010--Hb_001300_070 Hb_008595_010--Hb_000059_150 Hb_002587_020 Hb_002587_020 Hb_008595_010--Hb_002587_020 Hb_010381_060 Hb_010381_060 Hb_008595_010--Hb_010381_060 Hb_006915_060--Hb_009411_010 Hb_004218_240 Hb_004218_240 Hb_006915_060--Hb_004218_240 Hb_006915_060--Hb_003847_120 Hb_000010_180 Hb_000010_180 Hb_006915_060--Hb_000010_180 Hb_006915_060--Hb_001599_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2067 7.18471 4.76133 5.70186 20.2202 18.5031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.37064 3.67431 8.9344 6.71674 9.53305

CAGE analysis