Hb_000768_210

Information

Type -
Description -
Location Contig768: 214761-219379
Sequence    

Annotation

kegg
ID cit:102619911
description uncharacterized LOC102619911
nr
ID XP_012070307.1
description PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02617 PE=4 SV=1
Gene Ontology
ID GO:0005876
description nuclear matrix protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57538: 214791-219376
cDNA
(Sanger)
(ID:Location)		 025_L06.ab1: 214791-217704

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_210 0.0 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
2 Hb_002518_210 0.0712073969 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
3 Hb_001366_370 0.0784573792 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
4 Hb_002053_140 0.0820475194 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
5 Hb_001232_190 0.0851138821 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
6 Hb_024650_070 0.0858704793 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
7 Hb_086085_020 0.0873981817 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
8 Hb_172632_100 0.0874396576 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
9 Hb_001189_070 0.0878976807 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
10 Hb_000141_080 0.0887614623 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
11 Hb_008616_050 0.088806477 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
12 Hb_121729_010 0.0895718483 - - DNA binding protein, putative [Ricinus communis]
13 Hb_045003_010 0.0897230658 - - Stomatin-1, putative [Ricinus communis]
14 Hb_000310_090 0.0903999149 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
15 Hb_007878_010 0.0938279279 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
16 Hb_154948_040 0.0944323795 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
17 Hb_002042_150 0.0944836699 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
18 Hb_000029_070 0.0946719603 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
19 Hb_003929_270 0.0970429385 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
20 Hb_011628_060 0.097262461 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000768_210 Hb_000768_210 Hb_002518_210 Hb_002518_210 Hb_000768_210--Hb_002518_210 Hb_001366_370 Hb_001366_370 Hb_000768_210--Hb_001366_370 Hb_002053_140 Hb_002053_140 Hb_000768_210--Hb_002053_140 Hb_001232_190 Hb_001232_190 Hb_000768_210--Hb_001232_190 Hb_024650_070 Hb_024650_070 Hb_000768_210--Hb_024650_070 Hb_086085_020 Hb_086085_020 Hb_000768_210--Hb_086085_020 Hb_001189_070 Hb_001189_070 Hb_002518_210--Hb_001189_070 Hb_008841_020 Hb_008841_020 Hb_002518_210--Hb_008841_020 Hb_003633_030 Hb_003633_030 Hb_002518_210--Hb_003633_030 Hb_000141_080 Hb_000141_080 Hb_002518_210--Hb_000141_080 Hb_002518_210--Hb_001366_370 Hb_000200_020 Hb_000200_020 Hb_001366_370--Hb_000200_020 Hb_001366_370--Hb_002053_140 Hb_000783_010 Hb_000783_010 Hb_001366_370--Hb_000783_010 Hb_001427_160 Hb_001427_160 Hb_001366_370--Hb_001427_160 Hb_009787_030 Hb_009787_030 Hb_001366_370--Hb_009787_030 Hb_000510_300 Hb_000510_300 Hb_001366_370--Hb_000510_300 Hb_030736_020 Hb_030736_020 Hb_002053_140--Hb_030736_020 Hb_002053_140--Hb_001427_160 Hb_002053_140--Hb_000141_080 Hb_003929_270 Hb_003929_270 Hb_002053_140--Hb_003929_270 Hb_012796_020 Hb_012796_020 Hb_002053_140--Hb_012796_020 Hb_008616_050 Hb_008616_050 Hb_001232_190--Hb_008616_050 Hb_000579_120 Hb_000579_120 Hb_001232_190--Hb_000579_120 Hb_109000_020 Hb_109000_020 Hb_001232_190--Hb_109000_020 Hb_002641_060 Hb_002641_060 Hb_001232_190--Hb_002641_060 Hb_000058_130 Hb_000058_130 Hb_001232_190--Hb_000058_130 Hb_000207_150 Hb_000207_150 Hb_001232_190--Hb_000207_150 Hb_000329_200 Hb_000329_200 Hb_024650_070--Hb_000329_200 Hb_000045_310 Hb_000045_310 Hb_024650_070--Hb_000045_310 Hb_010361_010 Hb_010361_010 Hb_024650_070--Hb_010361_010 Hb_005551_040 Hb_005551_040 Hb_024650_070--Hb_005551_040 Hb_000566_120 Hb_000566_120 Hb_024650_070--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_024650_070--Hb_028396_010 Hb_000310_090 Hb_000310_090 Hb_086085_020--Hb_000310_090 Hb_086085_020--Hb_003929_270 Hb_086085_020--Hb_000141_080 Hb_008970_030 Hb_008970_030 Hb_086085_020--Hb_008970_030 Hb_002289_080 Hb_002289_080 Hb_086085_020--Hb_002289_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87713 1.56552 6.99998 10.8191 4.9099 7.31049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.15774 9.88206 5.1587 6.33801 5.56593

CAGE analysis