Hb_000769_040

Information

Type -
Description -
Location Contig769: 58694-63488
Sequence    

Annotation

kegg
ID bvg:104897134
description uncharacterized LOC104897134
nr
ID CAN78544.1
description hypothetical protein VITISV_028082 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B1A3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028082 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000769_040 0.0 - - hypothetical protein VITISV_028082 [Vitis vinifera]
2 Hb_022862_010 0.0037936913 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
3 Hb_012675_030 0.0047858365 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
4 Hb_090511_010 0.0050929623 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
5 Hb_000193_040 0.005828711 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
6 Hb_130862_010 0.0073438392 - - purine permease, putative [Ricinus communis]
7 Hb_154114_040 0.0084031438 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
8 Hb_000173_040 0.0091098716 - - putative xylanase inhibitor, partial [Triticum aestivum]
9 Hb_011179_010 0.0151396825 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
10 Hb_105767_030 0.0166023235 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007975_070 0.0180063395 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
12 Hb_030385_030 0.0185614547 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
13 Hb_000417_240 0.022950529 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
14 Hb_003995_040 0.0230906078 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
15 Hb_000173_070 0.0237708398 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
16 Hb_000307_080 0.024762271 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000280_070 0.0267232439 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
18 Hb_000784_050 0.0272476796 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
19 Hb_002151_140 0.0289772691 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
20 Hb_000691_060 0.0298041682 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000769_040 Hb_000769_040 Hb_022862_010 Hb_022862_010 Hb_000769_040--Hb_022862_010 Hb_012675_030 Hb_012675_030 Hb_000769_040--Hb_012675_030 Hb_090511_010 Hb_090511_010 Hb_000769_040--Hb_090511_010 Hb_000193_040 Hb_000193_040 Hb_000769_040--Hb_000193_040 Hb_130862_010 Hb_130862_010 Hb_000769_040--Hb_130862_010 Hb_154114_040 Hb_154114_040 Hb_000769_040--Hb_154114_040 Hb_022862_010--Hb_000193_040 Hb_022862_010--Hb_154114_040 Hb_000173_040 Hb_000173_040 Hb_022862_010--Hb_000173_040 Hb_022862_010--Hb_012675_030 Hb_022862_010--Hb_090511_010 Hb_012675_030--Hb_090511_010 Hb_012675_030--Hb_130862_010 Hb_012675_030--Hb_000193_040 Hb_105767_030 Hb_105767_030 Hb_012675_030--Hb_105767_030 Hb_090511_010--Hb_130862_010 Hb_090511_010--Hb_000193_040 Hb_090511_010--Hb_105767_030 Hb_000193_040--Hb_154114_040 Hb_000193_040--Hb_000173_040 Hb_011179_010 Hb_011179_010 Hb_000193_040--Hb_011179_010 Hb_130862_010--Hb_105767_030 Hb_007975_070 Hb_007975_070 Hb_130862_010--Hb_007975_070 Hb_130862_010--Hb_022862_010 Hb_154114_040--Hb_000173_040 Hb_154114_040--Hb_011179_010 Hb_030385_030 Hb_030385_030 Hb_154114_040--Hb_030385_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0177969 0.00423458 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis