Hb_000770_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig770: 6508-20883
Sequence    

Annotation

kegg
ID egr:104414888
description disease resistance protein RGA2-like
nr
ID XP_012086247.1
description PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067JPZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21064 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000770_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
2 Hb_004032_330 0.0768258575 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
3 Hb_005016_100 0.1148608022 - - -
4 Hb_021409_120 0.1237363255 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_006483_090 0.1483923925 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
6 Hb_004864_020 0.152576843 - - Polyprotein, putative [Solanum demissum]
7 Hb_000679_260 0.1597041516 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001153_090 0.1615813286 - - PREDICTED: protein FAM63A [Jatropha curcas]
9 Hb_007472_020 0.1617487836 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
10 Hb_000007_440 0.1680030806 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
11 Hb_002849_180 0.1740617487 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
12 Hb_000477_110 0.1741991927 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
13 Hb_004604_030 0.174247308 - - unnamed protein product [Coffea canephora]
14 Hb_002344_080 0.175167375 - - PREDICTED: protein YLS2-like [Populus euphratica]
15 Hb_000139_400 0.1769346641 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006269_010 0.1797699634 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
17 Hb_001174_030 0.1813628792 - - unnamed protein product [Vitis vinifera]
18 Hb_001956_080 0.182242447 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
19 Hb_000614_190 0.1827704116 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
20 Hb_001160_020 0.1835817197 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]

Gene co-expression network

sample Hb_000770_010 Hb_000770_010 Hb_004032_330 Hb_004032_330 Hb_000770_010--Hb_004032_330 Hb_005016_100 Hb_005016_100 Hb_000770_010--Hb_005016_100 Hb_021409_120 Hb_021409_120 Hb_000770_010--Hb_021409_120 Hb_006483_090 Hb_006483_090 Hb_000770_010--Hb_006483_090 Hb_004864_020 Hb_004864_020 Hb_000770_010--Hb_004864_020 Hb_000679_260 Hb_000679_260 Hb_000770_010--Hb_000679_260 Hb_004032_330--Hb_005016_100 Hb_004032_330--Hb_021409_120 Hb_004604_030 Hb_004604_030 Hb_004032_330--Hb_004604_030 Hb_027337_030 Hb_027337_030 Hb_004032_330--Hb_027337_030 Hb_003077_140 Hb_003077_140 Hb_004032_330--Hb_003077_140 Hb_005016_100--Hb_004604_030 Hb_002010_070 Hb_002010_070 Hb_005016_100--Hb_002010_070 Hb_000614_190 Hb_000614_190 Hb_005016_100--Hb_000614_190 Hb_001357_360 Hb_001357_360 Hb_005016_100--Hb_001357_360 Hb_021409_120--Hb_006483_090 Hb_000270_250 Hb_000270_250 Hb_021409_120--Hb_000270_250 Hb_000500_230 Hb_000500_230 Hb_021409_120--Hb_000500_230 Hb_000007_440 Hb_000007_440 Hb_021409_120--Hb_000007_440 Hb_000477_110 Hb_000477_110 Hb_006483_090--Hb_000477_110 Hb_002849_180 Hb_002849_180 Hb_006483_090--Hb_002849_180 Hb_006269_010 Hb_006269_010 Hb_006483_090--Hb_006269_010 Hb_001153_090 Hb_001153_090 Hb_006483_090--Hb_001153_090 Hb_006483_090--Hb_000007_440 Hb_007483_080 Hb_007483_080 Hb_006483_090--Hb_007483_080 Hb_000714_120 Hb_000714_120 Hb_004864_020--Hb_000714_120 Hb_000418_150 Hb_000418_150 Hb_004864_020--Hb_000418_150 Hb_002099_060 Hb_002099_060 Hb_004864_020--Hb_002099_060 Hb_029748_020 Hb_029748_020 Hb_004864_020--Hb_029748_020 Hb_000139_510 Hb_000139_510 Hb_004864_020--Hb_000139_510 Hb_000438_020 Hb_000438_020 Hb_004864_020--Hb_000438_020 Hb_000411_050 Hb_000411_050 Hb_000679_260--Hb_000411_050 Hb_004544_090 Hb_004544_090 Hb_000679_260--Hb_004544_090 Hb_001123_170 Hb_001123_170 Hb_000679_260--Hb_001123_170 Hb_000424_100 Hb_000424_100 Hb_000679_260--Hb_000424_100 Hb_005087_030 Hb_005087_030 Hb_000679_260--Hb_005087_030 Hb_020285_010 Hb_020285_010 Hb_000679_260--Hb_020285_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0554636 0.0404332 0.0400922 0 0.0133834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0383346 0.0502839

CAGE analysis