Hb_000770_020

Information

Type -
Description -
Location Contig770: 36333-38212
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39195g
description hypothetical protein
nr
ID XP_006370062.1
description hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GVK4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s39195g PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000770_020 0.0 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
2 Hb_011045_020 0.0011229634 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
3 Hb_000302_050 0.0022614922 - - -
4 Hb_126916_010 0.0028820921 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
5 Hb_006856_060 0.0060479415 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
6 Hb_010374_010 0.0074953925 - - TMV resistance protein N, putative [Ricinus communis]
7 Hb_005839_070 0.0079847647 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
8 Hb_003453_070 0.0121984408 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
9 Hb_005096_020 0.0152157146 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
10 Hb_000172_020 0.0180307599 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
11 Hb_001975_060 0.0236926608 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
12 Hb_135513_010 0.0281436129 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_103659_010 0.0310683373 - - conserved hypothetical protein [Ricinus communis]
14 Hb_110587_010 0.0316528289 - - unnamed protein product [Coffea canephora]
15 Hb_004077_010 0.0319336007 - - retinoblastoma-binding protein, putative [Ricinus communis]
16 Hb_061641_010 0.0345872283 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
17 Hb_081287_010 0.0346984152 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
18 Hb_000953_160 0.0361026085 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
19 Hb_019135_030 0.0362265404 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
20 Hb_003910_030 0.0365060615 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]

Gene co-expression network

sample Hb_000770_020 Hb_000770_020 Hb_011045_020 Hb_011045_020 Hb_000770_020--Hb_011045_020 Hb_000302_050 Hb_000302_050 Hb_000770_020--Hb_000302_050 Hb_126916_010 Hb_126916_010 Hb_000770_020--Hb_126916_010 Hb_006856_060 Hb_006856_060 Hb_000770_020--Hb_006856_060 Hb_010374_010 Hb_010374_010 Hb_000770_020--Hb_010374_010 Hb_005839_070 Hb_005839_070 Hb_000770_020--Hb_005839_070 Hb_011045_020--Hb_000302_050 Hb_011045_020--Hb_126916_010 Hb_011045_020--Hb_006856_060 Hb_011045_020--Hb_010374_010 Hb_011045_020--Hb_005839_070 Hb_000302_050--Hb_126916_010 Hb_000302_050--Hb_006856_060 Hb_000302_050--Hb_010374_010 Hb_000302_050--Hb_005839_070 Hb_126916_010--Hb_006856_060 Hb_126916_010--Hb_010374_010 Hb_126916_010--Hb_005839_070 Hb_005096_020 Hb_005096_020 Hb_006856_060--Hb_005096_020 Hb_000172_020 Hb_000172_020 Hb_006856_060--Hb_000172_020 Hb_010374_010--Hb_005839_070 Hb_003453_070 Hb_003453_070 Hb_010374_010--Hb_003453_070 Hb_005839_070--Hb_003453_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.370636 0 0.314158 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis