Hb_000771_060

Information

Type -
Description -
Location Contig771: 29895-35786
Sequence    

Annotation

kegg
ID rcu:RCOM_1579780
description spermidine synthase 1, putative (EC:2.1.1.53)
nr
ID XP_012090095.1
description PREDICTED: spermine synthase [Jatropha curcas]
swissprot
ID Q94BN2
description Spermine synthase OS=Arabidopsis thaliana GN=SPMS PE=1 SV=1
trembl
ID A0A067JEA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25988 PE=3 SV=1
Gene Ontology
ID GO:0030750
description spermine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57642: 31432-32327 , PASA_asmbl_57643: 33979-35665 , PASA_asmbl_57644: 35680-35810
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000771_060 0.0 - - PREDICTED: spermine synthase [Jatropha curcas]
2 Hb_000815_290 0.1011474038 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
3 Hb_000428_060 0.1077351171 - - malate dehydrogenase, putative [Ricinus communis]
4 Hb_000008_400 0.1082169149 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
5 Hb_028049_010 0.1156775531 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
6 Hb_000739_140 0.1215838539 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
7 Hb_001016_100 0.1228453001 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
8 Hb_007441_240 0.1292470008 - - ethphon-induced protein [Hevea brasiliensis]
9 Hb_005054_260 0.1306933153 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
10 Hb_002217_100 0.131109132 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
11 Hb_000382_020 0.132153837 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
12 Hb_004007_110 0.1348927667 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
13 Hb_002045_060 0.135497495 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
14 Hb_000260_620 0.135598045 - - Thermosensitive gluconokinase, putative [Ricinus communis]
15 Hb_009075_010 0.1358955636 - - 60S ribosomal protein L10B [Hevea brasiliensis]
16 Hb_000110_120 0.1370658424 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
17 Hb_000032_370 0.1382635801 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
18 Hb_000946_100 0.1405706229 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
19 Hb_002876_020 0.1406503912 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
20 Hb_000457_290 0.1419677357 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000771_060 Hb_000771_060 Hb_000815_290 Hb_000815_290 Hb_000771_060--Hb_000815_290 Hb_000428_060 Hb_000428_060 Hb_000771_060--Hb_000428_060 Hb_000008_400 Hb_000008_400 Hb_000771_060--Hb_000008_400 Hb_028049_010 Hb_028049_010 Hb_000771_060--Hb_028049_010 Hb_000739_140 Hb_000739_140 Hb_000771_060--Hb_000739_140 Hb_001016_100 Hb_001016_100 Hb_000771_060--Hb_001016_100 Hb_000059_010 Hb_000059_010 Hb_000815_290--Hb_000059_010 Hb_005054_260 Hb_005054_260 Hb_000815_290--Hb_005054_260 Hb_005496_090 Hb_005496_090 Hb_000815_290--Hb_005496_090 Hb_004089_020 Hb_004089_020 Hb_000815_290--Hb_004089_020 Hb_130719_010 Hb_130719_010 Hb_000815_290--Hb_130719_010 Hb_003106_100 Hb_003106_100 Hb_000428_060--Hb_003106_100 Hb_001123_160 Hb_001123_160 Hb_000428_060--Hb_001123_160 Hb_005276_040 Hb_005276_040 Hb_000428_060--Hb_005276_040 Hb_002876_020 Hb_002876_020 Hb_000428_060--Hb_002876_020 Hb_180343_010 Hb_180343_010 Hb_000428_060--Hb_180343_010 Hb_002045_060 Hb_002045_060 Hb_000428_060--Hb_002045_060 Hb_000300_700 Hb_000300_700 Hb_000008_400--Hb_000300_700 Hb_154038_020 Hb_154038_020 Hb_000008_400--Hb_154038_020 Hb_065525_120 Hb_065525_120 Hb_000008_400--Hb_065525_120 Hb_004931_110 Hb_004931_110 Hb_000008_400--Hb_004931_110 Hb_000008_400--Hb_000815_290 Hb_012305_130 Hb_012305_130 Hb_028049_010--Hb_012305_130 Hb_000110_120 Hb_000110_120 Hb_028049_010--Hb_000110_120 Hb_004007_110 Hb_004007_110 Hb_028049_010--Hb_004007_110 Hb_021409_080 Hb_021409_080 Hb_028049_010--Hb_021409_080 Hb_028049_010--Hb_000428_060 Hb_009075_010 Hb_009075_010 Hb_000739_140--Hb_009075_010 Hb_000739_140--Hb_005054_260 Hb_005306_070 Hb_005306_070 Hb_000739_140--Hb_005306_070 Hb_000768_130 Hb_000768_130 Hb_000739_140--Hb_000768_130 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_001410_060 Hb_001410_060 Hb_000739_140--Hb_001410_060 Hb_001892_070 Hb_001892_070 Hb_001016_100--Hb_001892_070 Hb_000920_200 Hb_000920_200 Hb_001016_100--Hb_000920_200 Hb_003360_040 Hb_003360_040 Hb_001016_100--Hb_003360_040 Hb_000140_090 Hb_000140_090 Hb_001016_100--Hb_000140_090 Hb_002968_040 Hb_002968_040 Hb_001016_100--Hb_002968_040 Hb_000964_030 Hb_000964_030 Hb_001016_100--Hb_000964_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02416 2.24348 5.94556 8.34246 0.397254 0.62396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.25135 10.9239 7.42628 5.36296 5.13606

CAGE analysis