Hb_000771_100

Information

Type -
Description -
Location Contig771: 56957-60838
Sequence    

Annotation

kegg
ID osa:4341190
description Os06g0527300
nr
ID NP_001057768.1
description Os06g0527300 [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID K4BEE9
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g007260.2 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cyclic nucleotide-gated ion channel 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000771_100 0.0 - - Os06g0527300 [Oryza sativa Japonica Group]
2 Hb_002272_260 0.068116764 - - -
3 Hb_000155_180 0.0741356094 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
4 Hb_000347_340 0.0798317594 - - ring finger, putative [Ricinus communis]
5 Hb_086703_010 0.0835586752 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
6 Hb_000620_080 0.089846329 - - hypothetical protein F775_32679 [Aegilops tauschii]
7 Hb_000676_290 0.0914274561 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
8 Hb_000684_230 0.0961120448 - - 40S ribosomal protein S23, putative [Ricinus communis]
9 Hb_000024_080 0.0995358633 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
10 Hb_001269_320 0.1008431712 - - 40S ribosomal protein S12A [Hevea brasiliensis]
11 Hb_003011_040 0.1022026174 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
12 Hb_001377_180 0.1030207278 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
13 Hb_002259_150 0.1030909464 - - BnaC04g40780D [Brassica napus]
14 Hb_004374_200 0.1036018695 - - putative GMP synthase [Oxybasis rubra]
15 Hb_010180_020 0.1039753849 - - hypothetical protein glysoja_030394 [Glycine soja]
16 Hb_004128_190 0.104557511 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
17 Hb_003874_020 0.1046817964 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
18 Hb_007432_080 0.1048431133 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
19 Hb_010180_010 0.1051156657 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
20 Hb_004502_020 0.1060695006 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000771_100 Hb_000771_100 Hb_002272_260 Hb_002272_260 Hb_000771_100--Hb_002272_260 Hb_000155_180 Hb_000155_180 Hb_000771_100--Hb_000155_180 Hb_000347_340 Hb_000347_340 Hb_000771_100--Hb_000347_340 Hb_086703_010 Hb_086703_010 Hb_000771_100--Hb_086703_010 Hb_000620_080 Hb_000620_080 Hb_000771_100--Hb_000620_080 Hb_000676_290 Hb_000676_290 Hb_000771_100--Hb_000676_290 Hb_004453_150 Hb_004453_150 Hb_002272_260--Hb_004453_150 Hb_002272_260--Hb_000676_290 Hb_002301_280 Hb_002301_280 Hb_002272_260--Hb_002301_280 Hb_002259_150 Hb_002259_150 Hb_002272_260--Hb_002259_150 Hb_011174_010 Hb_011174_010 Hb_002272_260--Hb_011174_010 Hb_001377_180 Hb_001377_180 Hb_000155_180--Hb_001377_180 Hb_003011_040 Hb_003011_040 Hb_000155_180--Hb_003011_040 Hb_004502_020 Hb_004502_020 Hb_000155_180--Hb_004502_020 Hb_000155_180--Hb_086703_010 Hb_000155_180--Hb_002272_260 Hb_000510_090 Hb_000510_090 Hb_000347_340--Hb_000510_090 Hb_004724_100 Hb_004724_100 Hb_000347_340--Hb_004724_100 Hb_102156_010 Hb_102156_010 Hb_000347_340--Hb_102156_010 Hb_000347_340--Hb_002272_260 Hb_000347_340--Hb_000620_080 Hb_003043_070 Hb_003043_070 Hb_086703_010--Hb_003043_070 Hb_001269_320 Hb_001269_320 Hb_086703_010--Hb_001269_320 Hb_086703_010--Hb_003011_040 Hb_003405_060 Hb_003405_060 Hb_086703_010--Hb_003405_060 Hb_141131_010 Hb_141131_010 Hb_000620_080--Hb_141131_010 Hb_004128_190 Hb_004128_190 Hb_000620_080--Hb_004128_190 Hb_001454_140 Hb_001454_140 Hb_000620_080--Hb_001454_140 Hb_004374_200 Hb_004374_200 Hb_000620_080--Hb_004374_200 Hb_001124_210 Hb_001124_210 Hb_000620_080--Hb_001124_210 Hb_000024_080 Hb_000024_080 Hb_000676_290--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_000676_290--Hb_000087_020 Hb_005398_030 Hb_005398_030 Hb_000676_290--Hb_005398_030 Hb_010180_020 Hb_010180_020 Hb_000676_290--Hb_010180_020 Hb_071130_030 Hb_071130_030 Hb_000676_290--Hb_071130_030 Hb_002112_040 Hb_002112_040 Hb_000676_290--Hb_002112_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9875 3.42876 2.96339 10.9577 8.72925 26.1419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5523 21.1776 8.26159 5.00425 2.92496

CAGE analysis