Hb_000771_110

Information

Type -
Description -
Location Contig771: 69081-75488
Sequence    

Annotation

kegg
ID pop:POPTR_0015s02100g
description POPTRDRAFT_666170; hypothetical protein
nr
ID ACF35047.1
description protein phosphatase 2C [Hevea brasiliensis]
swissprot
ID Q94AT1
description Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1
trembl
ID B5A9S6
description Protein phosphatase 2C OS=Hevea brasiliensis GN=PP2C PE=2 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 76 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57653: 70873-75453 , PASA_asmbl_57654: 68902-75475 , PASA_asmbl_57655: 71437-74721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000771_110 0.0 - - protein phosphatase 2C [Hevea brasiliensis]
2 Hb_002249_140 0.0673334314 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
3 Hb_000107_390 0.0734322481 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
4 Hb_001001_160 0.0824320256 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
5 Hb_000001_020 0.0851969449 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
6 Hb_000481_010 0.086767868 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
7 Hb_000025_200 0.0883484516 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
8 Hb_000784_090 0.0886197463 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
9 Hb_000732_260 0.0887350113 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
10 Hb_002044_090 0.091261512 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
11 Hb_005754_020 0.0921775071 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
12 Hb_004813_010 0.0933025175 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000676_220 0.0936172568 - - ADP-ribosylation factor, putative [Ricinus communis]
14 Hb_000017_120 0.0954623704 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
15 Hb_000418_180 0.0958329063 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000733_060 0.096339664 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
17 Hb_000538_020 0.0965317224 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
18 Hb_002377_040 0.0970230173 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_007908_020 0.0979449676 - - zinc finger family protein [Populus trichocarpa]
20 Hb_000359_170 0.0985011051 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]

Gene co-expression network

sample Hb_000771_110 Hb_000771_110 Hb_002249_140 Hb_002249_140 Hb_000771_110--Hb_002249_140 Hb_000107_390 Hb_000107_390 Hb_000771_110--Hb_000107_390 Hb_001001_160 Hb_001001_160 Hb_000771_110--Hb_001001_160 Hb_000001_020 Hb_000001_020 Hb_000771_110--Hb_000001_020 Hb_000481_010 Hb_000481_010 Hb_000771_110--Hb_000481_010 Hb_000025_200 Hb_000025_200 Hb_000771_110--Hb_000025_200 Hb_008725_250 Hb_008725_250 Hb_002249_140--Hb_008725_250 Hb_000732_260 Hb_000732_260 Hb_002249_140--Hb_000732_260 Hb_002044_090 Hb_002044_090 Hb_002249_140--Hb_002044_090 Hb_002249_140--Hb_000481_010 Hb_000784_090 Hb_000784_090 Hb_002249_140--Hb_000784_090 Hb_168918_020 Hb_168918_020 Hb_000107_390--Hb_168918_020 Hb_000538_020 Hb_000538_020 Hb_000107_390--Hb_000538_020 Hb_012340_030 Hb_012340_030 Hb_000107_390--Hb_012340_030 Hb_000017_120 Hb_000017_120 Hb_000107_390--Hb_000017_120 Hb_000107_390--Hb_000001_020 Hb_001001_160--Hb_000025_200 Hb_010174_130 Hb_010174_130 Hb_001001_160--Hb_010174_130 Hb_000733_060 Hb_000733_060 Hb_001001_160--Hb_000733_060 Hb_001001_160--Hb_000001_020 Hb_002377_040 Hb_002377_040 Hb_001001_160--Hb_002377_040 Hb_003609_040 Hb_003609_040 Hb_000001_020--Hb_003609_040 Hb_000001_020--Hb_000025_200 Hb_007908_020 Hb_007908_020 Hb_000001_020--Hb_007908_020 Hb_000001_020--Hb_000017_120 Hb_000761_020 Hb_000761_020 Hb_000001_020--Hb_000761_020 Hb_000340_510 Hb_000340_510 Hb_000481_010--Hb_000340_510 Hb_000481_010--Hb_000784_090 Hb_002026_110 Hb_002026_110 Hb_000481_010--Hb_002026_110 Hb_002818_040 Hb_002818_040 Hb_000481_010--Hb_002818_040 Hb_002631_050 Hb_002631_050 Hb_000481_010--Hb_002631_050 Hb_000025_200--Hb_007908_020 Hb_002368_050 Hb_002368_050 Hb_000025_200--Hb_002368_050 Hb_002027_130 Hb_002027_130 Hb_000025_200--Hb_002027_130 Hb_002973_080 Hb_002973_080 Hb_000025_200--Hb_002973_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
232.451 51.2914 45.8788 31.128 213.322 148.93
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
171.175 114.419 153.084 32.1222 12.0209

CAGE analysis