Hb_000771_130

Information

Type -
Description -
Location Contig771: 84389-92066
Sequence    

Annotation

kegg
ID rcu:RCOM_1580260
description trehalose-6-phosphate synthase, putative (EC:3.1.3.12)
nr
ID XP_002513579.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID Q6ZGP8
description Probable trehalose-phosphate phosphatase 4 OS=Oryza sativa subsp. japonica GN=TPP4 PE=2 SV=1
trembl
ID B9RIL0
description Trehalose 6-phosphate phosphatase OS=Ricinus communis GN=RCOM_1580260 PE=3 SV=1
Gene Ontology
ID GO:0004805
description probable trehalose-phosphate phosphatase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57659: 90148-90772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000771_130 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_000016_190 0.1143807152 - - ABC transporter B family member 28 [Glycine soja]
3 Hb_000161_150 0.1158855373 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
4 Hb_000432_050 0.1275725542 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
5 Hb_009314_010 0.1500180715 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
6 Hb_005839_110 0.1512890242 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
7 Hb_000562_040 0.1560832515 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
8 Hb_029510_040 0.1574415123 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
9 Hb_001538_140 0.1609638325 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
10 Hb_000784_030 0.1624357682 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
11 Hb_002756_020 0.1628608437 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
12 Hb_000316_020 0.1635124529 - - protein binding protein, putative [Ricinus communis]
13 Hb_000141_030 0.1690413955 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
14 Hb_000454_070 0.1734529512 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
15 Hb_005614_050 0.1762901819 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
16 Hb_010931_050 0.1763321638 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
17 Hb_000327_220 0.176667775 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
18 Hb_005489_100 0.1786468901 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002759_240 0.1824483769 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
20 Hb_000368_060 0.1839620185 - - thioredoxin H-type 6 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000771_130 Hb_000771_130 Hb_000016_190 Hb_000016_190 Hb_000771_130--Hb_000016_190 Hb_000161_150 Hb_000161_150 Hb_000771_130--Hb_000161_150 Hb_000432_050 Hb_000432_050 Hb_000771_130--Hb_000432_050 Hb_009314_010 Hb_009314_010 Hb_000771_130--Hb_009314_010 Hb_005839_110 Hb_005839_110 Hb_000771_130--Hb_005839_110 Hb_000562_040 Hb_000562_040 Hb_000771_130--Hb_000562_040 Hb_000327_220 Hb_000327_220 Hb_000016_190--Hb_000327_220 Hb_002756_020 Hb_002756_020 Hb_000016_190--Hb_002756_020 Hb_000016_190--Hb_000432_050 Hb_012799_100 Hb_012799_100 Hb_000016_190--Hb_012799_100 Hb_000016_190--Hb_009314_010 Hb_000161_150--Hb_009314_010 Hb_000161_150--Hb_002756_020 Hb_000316_020 Hb_000316_020 Hb_000161_150--Hb_000316_020 Hb_000141_030 Hb_000141_030 Hb_000161_150--Hb_000141_030 Hb_000161_150--Hb_000432_050 Hb_001538_140 Hb_001538_140 Hb_000432_050--Hb_001538_140 Hb_029510_040 Hb_029510_040 Hb_000432_050--Hb_029510_040 Hb_000432_050--Hb_005839_110 Hb_000432_050--Hb_002756_020 Hb_000432_050--Hb_009314_010 Hb_006816_450 Hb_006816_450 Hb_009314_010--Hb_006816_450 Hb_009314_010--Hb_002756_020 Hb_005224_010 Hb_005224_010 Hb_009314_010--Hb_005224_010 Hb_000162_140 Hb_000162_140 Hb_005839_110--Hb_000162_140 Hb_003147_050 Hb_003147_050 Hb_005839_110--Hb_003147_050 Hb_000061_300 Hb_000061_300 Hb_005839_110--Hb_000061_300 Hb_003929_120 Hb_003929_120 Hb_005839_110--Hb_003929_120 Hb_001575_020 Hb_001575_020 Hb_005839_110--Hb_001575_020 Hb_000368_060 Hb_000368_060 Hb_000562_040--Hb_000368_060 Hb_000784_030 Hb_000784_030 Hb_000562_040--Hb_000784_030 Hb_003581_260 Hb_003581_260 Hb_000562_040--Hb_003581_260 Hb_001135_210 Hb_001135_210 Hb_000562_040--Hb_001135_210 Hb_024714_060 Hb_024714_060 Hb_000562_040--Hb_024714_060 Hb_005614_050 Hb_005614_050 Hb_000562_040--Hb_005614_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.421792 0.711693 0.575379 0.154584 0.918877 0.931941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34967 5.36239 9.27759 2.25755 0.480595

CAGE analysis