Hb_000771_170

Information

Type -
Description -
Location Contig771: 122559-129910
Sequence    

Annotation

kegg
ID rcu:RCOM_1580380
description ATP-dependent peptidase, putative (EC:3.6.4.3)
nr
ID XP_012090106.1
description PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID Q9FGM0
description ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1
trembl
ID A0A067JQA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25996 PE=3 SV=1
Gene Ontology
ID GO:0009941
description atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57666: 122544-129814
cDNA
(Sanger)
(ID:Location)		 024_B13.ab1: 130701-130920

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000771_170 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_002600_070 0.0610884907 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
3 Hb_004225_040 0.0795657244 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
4 Hb_000562_070 0.0818143841 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
5 Hb_001472_160 0.083429311 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_004884_180 0.0839434434 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
7 Hb_000482_050 0.0849696588 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
8 Hb_001277_340 0.085082508 - - aldo/keto reductase, putative [Ricinus communis]
9 Hb_001828_120 0.0857711547 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
10 Hb_002249_030 0.0876185493 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
11 Hb_001396_020 0.0893861525 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
12 Hb_005305_130 0.0906681565 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
13 Hb_002973_110 0.0947444388 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_009158_060 0.095344143 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
15 Hb_000748_090 0.0958688597 - - glucose inhibited division protein A, putative [Ricinus communis]
16 Hb_000878_160 0.0970982639 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
17 Hb_004629_030 0.0974280656 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_031042_060 0.0983768472 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_004837_020 0.0984849555 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
20 Hb_003529_140 0.0992426037 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000771_170 Hb_000771_170 Hb_002600_070 Hb_002600_070 Hb_000771_170--Hb_002600_070 Hb_004225_040 Hb_004225_040 Hb_000771_170--Hb_004225_040 Hb_000562_070 Hb_000562_070 Hb_000771_170--Hb_000562_070 Hb_001472_160 Hb_001472_160 Hb_000771_170--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000771_170--Hb_004884_180 Hb_000482_050 Hb_000482_050 Hb_000771_170--Hb_000482_050 Hb_000748_090 Hb_000748_090 Hb_002600_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_002600_070--Hb_007012_030 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_002600_070--Hb_000482_050 Hb_009158_060 Hb_009158_060 Hb_002600_070--Hb_009158_060 Hb_004225_040--Hb_001472_160 Hb_004225_040--Hb_004884_180 Hb_000224_220 Hb_000224_220 Hb_004225_040--Hb_000224_220 Hb_001140_180 Hb_001140_180 Hb_004225_040--Hb_001140_180 Hb_002828_060 Hb_002828_060 Hb_004225_040--Hb_002828_060 Hb_000529_130 Hb_000529_130 Hb_000562_070--Hb_000529_130 Hb_000562_070--Hb_001277_340 Hb_001279_020 Hb_001279_020 Hb_000562_070--Hb_001279_020 Hb_029552_020 Hb_029552_020 Hb_000562_070--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_000562_070--Hb_005305_130 Hb_025477_050 Hb_025477_050 Hb_001472_160--Hb_025477_050 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_002973_110 Hb_002973_110 Hb_001472_160--Hb_002973_110 Hb_004884_180--Hb_000220_210 Hb_031042_060 Hb_031042_060 Hb_004884_180--Hb_031042_060 Hb_010174_090 Hb_010174_090 Hb_004884_180--Hb_010174_090 Hb_000482_050--Hb_002828_060 Hb_004629_030 Hb_004629_030 Hb_000482_050--Hb_004629_030 Hb_001396_020 Hb_001396_020 Hb_000482_050--Hb_001396_020 Hb_000482_050--Hb_007012_030 Hb_000482_050--Hb_000748_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4192 22.3724 34.1071 15.2424 15.7859 12.7201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.76107 4.90643 8.21254 14.9217 42.9152

CAGE analysis