Hb_000771_180

Information

Type -
Description -
Location Contig771: 130687-136228
Sequence    

Annotation

kegg
ID rcu:RCOM_1580390
description polypyrimidine tract binding protein, putative (EC:1.3.1.74)
nr
ID XP_002513582.1
description polypyrimidine tract binding protein, putative [Ricinus communis]
swissprot
ID Q9FGL9
description Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=1 SV=1
trembl
ID B9RIL3
description Polypyrimidine tract binding protein, putative OS=Ricinus communis GN=RCOM_1580390 PE=4 SV=1
Gene Ontology
ID GO:0000932
description polypyrimidine tract-binding protein homolog 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57668: 134410-135576
cDNA
(Sanger)
(ID:Location)		 024_B13.ab1: 130701-130920

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000771_180 0.0 - - polypyrimidine tract binding protein, putative [Ricinus communis]
2 Hb_002783_310 0.0474148176 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
3 Hb_050847_020 0.0605572101 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_000160_350 0.0649669783 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
5 Hb_140049_030 0.0651733729 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
6 Hb_000334_270 0.0664312737 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_000664_070 0.0668451073 - - PREDICTED: protein cereblon [Jatropha curcas]
8 Hb_006355_010 0.0669910033 - - PREDICTED: protein NLRC3 [Jatropha curcas]
9 Hb_002045_150 0.0704799302 - - histone acetyltransferase gcn5, putative [Ricinus communis]
10 Hb_007520_030 0.0713585684 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
11 Hb_011386_040 0.0724436167 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
12 Hb_032202_110 0.0728151183 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
13 Hb_005965_030 0.0766991096 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
14 Hb_131646_010 0.076856512 - - protein arginine n-methyltransferase, putative [Ricinus communis]
15 Hb_000487_420 0.0795634777 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
16 Hb_000300_360 0.0796420244 - - PREDICTED: exosome component 10 [Jatropha curcas]
17 Hb_032208_040 0.0796768134 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
18 Hb_008554_120 0.0801811856 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
19 Hb_111198_010 0.0802840754 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
20 Hb_001799_050 0.0806982229 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]

Gene co-expression network

sample Hb_000771_180 Hb_000771_180 Hb_002783_310 Hb_002783_310 Hb_000771_180--Hb_002783_310 Hb_050847_020 Hb_050847_020 Hb_000771_180--Hb_050847_020 Hb_000160_350 Hb_000160_350 Hb_000771_180--Hb_000160_350 Hb_140049_030 Hb_140049_030 Hb_000771_180--Hb_140049_030 Hb_000334_270 Hb_000334_270 Hb_000771_180--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_000771_180--Hb_000664_070 Hb_002783_310--Hb_050847_020 Hb_007520_030 Hb_007520_030 Hb_002783_310--Hb_007520_030 Hb_002783_310--Hb_000334_270 Hb_002783_310--Hb_000664_070 Hb_000046_010 Hb_000046_010 Hb_002783_310--Hb_000046_010 Hb_002045_150 Hb_002045_150 Hb_050847_020--Hb_002045_150 Hb_011386_040 Hb_011386_040 Hb_050847_020--Hb_011386_040 Hb_050847_020--Hb_140049_030 Hb_000136_090 Hb_000136_090 Hb_050847_020--Hb_000136_090 Hb_005965_030 Hb_005965_030 Hb_000160_350--Hb_005965_030 Hb_000640_310 Hb_000640_310 Hb_000160_350--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000160_350--Hb_001799_050 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_022256_060 Hb_022256_060 Hb_000160_350--Hb_022256_060 Hb_140049_030--Hb_002045_150 Hb_000300_360 Hb_000300_360 Hb_140049_030--Hb_000300_360 Hb_140049_020 Hb_140049_020 Hb_140049_030--Hb_140049_020 Hb_001545_200 Hb_001545_200 Hb_140049_030--Hb_001545_200 Hb_000926_190 Hb_000926_190 Hb_000334_270--Hb_000926_190 Hb_010068_040 Hb_010068_040 Hb_000334_270--Hb_010068_040 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_033153_070 Hb_033153_070 Hb_000334_270--Hb_033153_070 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_002175_030 Hb_002175_030 Hb_000334_270--Hb_002175_030 Hb_000594_040 Hb_000594_040 Hb_000664_070--Hb_000594_040 Hb_008147_040 Hb_008147_040 Hb_000664_070--Hb_008147_040 Hb_000664_070--Hb_000640_310 Hb_000664_070--Hb_000160_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1066 14.4279 11.3843 5.09927 18.506 14.8858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.79232 9.92529 7.34455 11.8474 5.25215

CAGE analysis