Hb_000773_040

Information

Type -
Description -
Location Contig773: 58821-73228
Sequence    

Annotation

kegg
ID rcu:RCOM_1032150
description translation initiation factor if-3, putative
nr
ID XP_012081888.1
description PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
swissprot
ID Q9I0A0
description Translation initiation factor IF-3 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=infC PE=3 SV=1
trembl
ID A0A067JZX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19244 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57698: 59387-73222 , PASA_asmbl_57699: 67550-67692 , PASA_asmbl_57700: 69323-69694
cDNA
(Sanger)
(ID:Location)		 024_L10.ab1: 72998-73202

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000773_040 0.0 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
2 Hb_073171_070 0.0468721135 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
3 Hb_000270_190 0.0490262684 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
4 Hb_000317_100 0.0580389721 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
5 Hb_000409_050 0.0581157696 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
6 Hb_002890_130 0.058507753 - - tip120, putative [Ricinus communis]
7 Hb_003040_050 0.0597121993 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
8 Hb_000363_310 0.0608114348 - - DNA topoisomerase type I, putative [Ricinus communis]
9 Hb_002027_080 0.0625340464 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
10 Hb_002071_070 0.062571646 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
11 Hb_033312_040 0.0637261502 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
12 Hb_000441_090 0.0645615622 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
13 Hb_002411_110 0.066870207 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
14 Hb_012518_070 0.0669001614 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
15 Hb_000078_140 0.0672203855 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
16 Hb_000139_080 0.0676148088 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
17 Hb_011819_020 0.0699565111 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
18 Hb_005489_040 0.0705735569 - - PREDICTED: cullin-1 [Jatropha curcas]
19 Hb_005215_010 0.0706647124 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
20 Hb_009288_020 0.0708635129 - - PREDICTED: protein FRIGIDA [Jatropha curcas]

Gene co-expression network

sample Hb_000773_040 Hb_000773_040 Hb_073171_070 Hb_073171_070 Hb_000773_040--Hb_073171_070 Hb_000270_190 Hb_000270_190 Hb_000773_040--Hb_000270_190 Hb_000317_100 Hb_000317_100 Hb_000773_040--Hb_000317_100 Hb_000409_050 Hb_000409_050 Hb_000773_040--Hb_000409_050 Hb_002890_130 Hb_002890_130 Hb_000773_040--Hb_002890_130 Hb_003040_050 Hb_003040_050 Hb_000773_040--Hb_003040_050 Hb_073171_070--Hb_003040_050 Hb_006663_060 Hb_006663_060 Hb_073171_070--Hb_006663_060 Hb_009288_020 Hb_009288_020 Hb_073171_070--Hb_009288_020 Hb_073171_070--Hb_000270_190 Hb_007413_010 Hb_007413_010 Hb_073171_070--Hb_007413_010 Hb_005214_140 Hb_005214_140 Hb_000270_190--Hb_005214_140 Hb_000270_190--Hb_003040_050 Hb_004324_360 Hb_004324_360 Hb_000270_190--Hb_004324_360 Hb_001329_250 Hb_001329_250 Hb_000270_190--Hb_001329_250 Hb_005215_010 Hb_005215_010 Hb_000317_100--Hb_005215_010 Hb_000317_100--Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_000317_100--Hb_011819_020 Hb_000317_100--Hb_003040_050 Hb_002411_110 Hb_002411_110 Hb_000317_100--Hb_002411_110 Hb_005489_040 Hb_005489_040 Hb_000409_050--Hb_005489_040 Hb_006189_020 Hb_006189_020 Hb_000409_050--Hb_006189_020 Hb_027506_010 Hb_027506_010 Hb_000409_050--Hb_027506_010 Hb_016172_030 Hb_016172_030 Hb_000409_050--Hb_016172_030 Hb_060980_010 Hb_060980_010 Hb_000409_050--Hb_060980_010 Hb_002890_130--Hb_011819_020 Hb_002890_130--Hb_002411_110 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480 Hb_003040_050--Hb_009288_020 Hb_003040_050--Hb_006663_060 Hb_011174_020 Hb_011174_020 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4023 11.0563 12.7247 13.9272 9.00789 9.28545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.68102 8.24531 8.7099 11.6901 16.4722

CAGE analysis