Hb_000776_040

Information

Type transcription factor
Description TF Family: SBP
Location Contig776: 58948-67057
Sequence    

Annotation

kegg
ID rcu:RCOM_1468500
description LIGULELESS1 protein, putative
nr
ID XP_012080418.1
description PREDICTED: squamosa promoter-binding-like protein 6 isoform X3 [Jatropha curcas]
swissprot
ID Q94JW8
description Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2
trembl
ID A0A067K5H8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11753 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57788: 58949-68631 , PASA_asmbl_57789: 62969-63068 , PASA_asmbl_57790: 65907-66173 , PASA_asmbl_57792: 66587-66963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000776_040 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X3 [Jatropha curcas]
2 Hb_000203_070 0.1179050523 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
3 Hb_027380_150 0.1313732841 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000791_050 0.1528349555 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
5 Hb_003929_190 0.1560164304 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
6 Hb_003540_120 0.1587331674 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_000834_180 0.1592119194 - - PREDICTED: kinesin-13A-like isoform X1 [Jatropha curcas]
8 Hb_034507_060 0.1627977334 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
9 Hb_000027_170 0.1662685615 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
10 Hb_000316_060 0.1732400292 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
11 Hb_000527_080 0.1739933954 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
12 Hb_004218_200 0.1749422875 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_001178_090 0.1754382833 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
14 Hb_002774_120 0.1754828672 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
15 Hb_023226_030 0.1768710876 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
16 Hb_002003_090 0.1786897367 - - PREDICTED: TPR repeat-containing protein ZIP4 isoform X1 [Jatropha curcas]
17 Hb_000320_310 0.1790184447 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
18 Hb_012395_050 0.1794042145 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
19 Hb_189003_070 0.17956762 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
20 Hb_012760_090 0.1817924613 - - Aspartic proteinase-like protein 1 [Morus notabilis]

Gene co-expression network

sample Hb_000776_040 Hb_000776_040 Hb_000203_070 Hb_000203_070 Hb_000776_040--Hb_000203_070 Hb_027380_150 Hb_027380_150 Hb_000776_040--Hb_027380_150 Hb_000791_050 Hb_000791_050 Hb_000776_040--Hb_000791_050 Hb_003929_190 Hb_003929_190 Hb_000776_040--Hb_003929_190 Hb_003540_120 Hb_003540_120 Hb_000776_040--Hb_003540_120 Hb_000834_180 Hb_000834_180 Hb_000776_040--Hb_000834_180 Hb_001178_090 Hb_001178_090 Hb_000203_070--Hb_001178_090 Hb_034507_060 Hb_034507_060 Hb_000203_070--Hb_034507_060 Hb_005333_080 Hb_005333_080 Hb_000203_070--Hb_005333_080 Hb_000085_380 Hb_000085_380 Hb_000203_070--Hb_000085_380 Hb_012760_090 Hb_012760_090 Hb_000203_070--Hb_012760_090 Hb_027380_150--Hb_000791_050 Hb_010050_020 Hb_010050_020 Hb_027380_150--Hb_010050_020 Hb_021409_070 Hb_021409_070 Hb_027380_150--Hb_021409_070 Hb_189003_070 Hb_189003_070 Hb_027380_150--Hb_189003_070 Hb_012807_150 Hb_012807_150 Hb_027380_150--Hb_012807_150 Hb_000318_170 Hb_000318_170 Hb_000791_050--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000791_050--Hb_001221_390 Hb_000737_010 Hb_000737_010 Hb_000791_050--Hb_000737_010 Hb_000791_050--Hb_010050_020 Hb_000438_010 Hb_000438_010 Hb_000791_050--Hb_000438_010 Hb_000012_400 Hb_000012_400 Hb_003929_190--Hb_000012_400 Hb_002539_050 Hb_002539_050 Hb_003929_190--Hb_002539_050 Hb_003029_060 Hb_003029_060 Hb_003929_190--Hb_003029_060 Hb_005941_030 Hb_005941_030 Hb_003929_190--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_003929_190--Hb_000071_160 Hb_003929_190--Hb_000203_070 Hb_030685_010 Hb_030685_010 Hb_003540_120--Hb_030685_010 Hb_001597_030 Hb_001597_030 Hb_003540_120--Hb_001597_030 Hb_003606_050 Hb_003606_050 Hb_003540_120--Hb_003606_050 Hb_001188_050 Hb_001188_050 Hb_003540_120--Hb_001188_050 Hb_001823_090 Hb_001823_090 Hb_003540_120--Hb_001823_090 Hb_002681_120 Hb_002681_120 Hb_003540_120--Hb_002681_120 Hb_001247_150 Hb_001247_150 Hb_000834_180--Hb_001247_150 Hb_000834_220 Hb_000834_220 Hb_000834_180--Hb_000834_220 Hb_031385_010 Hb_031385_010 Hb_000834_180--Hb_031385_010 Hb_001946_200 Hb_001946_200 Hb_000834_180--Hb_001946_200 Hb_009113_080 Hb_009113_080 Hb_000834_180--Hb_009113_080 Hb_002217_360 Hb_002217_360 Hb_000834_180--Hb_002217_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75255 1.57149 5.27555 7.38851 0.0469483 0.456462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0886991 0.0872393 0.331007 2.96359 2.95126

CAGE analysis