Hb_000776_090

Information

Type -
Description -
Location Contig776: 115090-118091
Sequence    

Annotation

kegg
ID rcu:RCOM_1468830
description Protein COBRA precursor, putative
nr
ID XP_012080413.1
description PREDICTED: COBRA-like protein 4 [Jatropha curcas]
swissprot
ID Q9LFW3
description COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2
trembl
ID A0A067KHQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11750 PE=4 SV=1
Gene Ontology
ID GO:0031225
description cobra-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57797: 115106-117923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000776_090 0.0 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
2 Hb_000836_640 0.0448082391 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
3 Hb_005523_030 0.0478589753 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
4 Hb_000086_490 0.0486698919 - - cellulose synthase [Populus tomentosa]
5 Hb_002739_140 0.0488272382 - - PREDICTED: protein TPX2 [Jatropha curcas]
6 Hb_050514_030 0.0523738756 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
7 Hb_000162_010 0.0572617929 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
8 Hb_001935_060 0.0590465379 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
9 Hb_005686_040 0.0600996038 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000193_320 0.0608283742 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001500_090 0.0622983765 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001051_060 0.0632153522 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
13 Hb_010166_010 0.064556073 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
14 Hb_004920_150 0.0677978142 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000328_030 0.0710208251 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
16 Hb_002750_030 0.0710871299 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
17 Hb_002078_180 0.0714283596 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
18 Hb_015807_090 0.0724154342 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
19 Hb_001377_220 0.0741049321 - - dopamine beta-monooxygenase, putative [Ricinus communis]
20 Hb_001189_080 0.0745591445 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000776_090 Hb_000776_090 Hb_000836_640 Hb_000836_640 Hb_000776_090--Hb_000836_640 Hb_005523_030 Hb_005523_030 Hb_000776_090--Hb_005523_030 Hb_000086_490 Hb_000086_490 Hb_000776_090--Hb_000086_490 Hb_002739_140 Hb_002739_140 Hb_000776_090--Hb_002739_140 Hb_050514_030 Hb_050514_030 Hb_000776_090--Hb_050514_030 Hb_000162_010 Hb_000162_010 Hb_000776_090--Hb_000162_010 Hb_001477_050 Hb_001477_050 Hb_000836_640--Hb_001477_050 Hb_002750_030 Hb_002750_030 Hb_000836_640--Hb_002750_030 Hb_000836_640--Hb_000162_010 Hb_001307_180 Hb_001307_180 Hb_000836_640--Hb_001307_180 Hb_000836_640--Hb_005523_030 Hb_005523_030--Hb_000086_490 Hb_015807_090 Hb_015807_090 Hb_005523_030--Hb_015807_090 Hb_001051_060 Hb_001051_060 Hb_005523_030--Hb_001051_060 Hb_005686_040 Hb_005686_040 Hb_005523_030--Hb_005686_040 Hb_002078_180 Hb_002078_180 Hb_005523_030--Hb_002078_180 Hb_000086_490--Hb_015807_090 Hb_000086_490--Hb_005686_040 Hb_000086_490--Hb_001051_060 Hb_000328_030 Hb_000328_030 Hb_000086_490--Hb_000328_030 Hb_000086_490--Hb_002078_180 Hb_004920_150 Hb_004920_150 Hb_002739_140--Hb_004920_150 Hb_003972_070 Hb_003972_070 Hb_002739_140--Hb_003972_070 Hb_038927_020 Hb_038927_020 Hb_002739_140--Hb_038927_020 Hb_010488_050 Hb_010488_050 Hb_002739_140--Hb_010488_050 Hb_002739_140--Hb_050514_030 Hb_010166_010 Hb_010166_010 Hb_050514_030--Hb_010166_010 Hb_001935_060 Hb_001935_060 Hb_050514_030--Hb_001935_060 Hb_050514_030--Hb_000836_640 Hb_010288_010 Hb_010288_010 Hb_050514_030--Hb_010288_010 Hb_000162_010--Hb_002750_030 Hb_000162_010--Hb_001477_050 Hb_005056_040 Hb_005056_040 Hb_000162_010--Hb_005056_040 Hb_002276_120 Hb_002276_120 Hb_000162_010--Hb_002276_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0233179 6.80983 6.11787 167.805 0.147248 0.011423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.814933 114.936

CAGE analysis