Hb_000780_060

Information

Type -
Description -
Location Contig780: 60757-66668
Sequence    

Annotation

kegg
ID cit:102609355
description uncharacterized LOC102609355
nr
ID XP_006447764.1
description hypothetical protein CICLE_v10017178mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4UA31
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017178mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57915: 60624-60769 , PASA_asmbl_57916: 60770-66661 , PASA_asmbl_57917: 61086-61360
cDNA
(Sanger)
(ID:Location)		 034_N08.ab1: 60770-66659

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000780_060 0.0 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
2 Hb_000349_060 0.0634431612 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
3 Hb_002983_010 0.0729357805 - - F-box family protein [Populus trichocarpa]
4 Hb_001358_030 0.0740233895 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
5 Hb_001301_160 0.0788724224 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
6 Hb_003038_030 0.0823514587 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
7 Hb_000060_040 0.0834921237 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
8 Hb_007590_010 0.0841032743 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_003376_320 0.0842185532 - - 60S ribosomal protein L12A [Hevea brasiliensis]
10 Hb_001369_660 0.0863087342 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
11 Hb_001195_760 0.0873811078 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
12 Hb_105386_010 0.0878152499 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
13 Hb_000457_110 0.0888310833 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
14 Hb_086639_070 0.0914997796 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
15 Hb_096563_010 0.0925080451 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
16 Hb_000099_240 0.0928350667 - - 60S ribosomal protein L7a, putative [Ricinus communis]
17 Hb_005333_070 0.0937282537 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000661_250 0.0942593761 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
19 Hb_004944_010 0.0946326073 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
20 Hb_003687_110 0.0946565412 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]

Gene co-expression network

sample Hb_000780_060 Hb_000780_060 Hb_000349_060 Hb_000349_060 Hb_000780_060--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000780_060--Hb_002983_010 Hb_001358_030 Hb_001358_030 Hb_000780_060--Hb_001358_030 Hb_001301_160 Hb_001301_160 Hb_000780_060--Hb_001301_160 Hb_003038_030 Hb_003038_030 Hb_000780_060--Hb_003038_030 Hb_000060_040 Hb_000060_040 Hb_000780_060--Hb_000060_040 Hb_004944_010 Hb_004944_010 Hb_000349_060--Hb_004944_010 Hb_105386_010 Hb_105386_010 Hb_000349_060--Hb_105386_010 Hb_023001_050 Hb_023001_050 Hb_000349_060--Hb_023001_050 Hb_000349_060--Hb_001358_030 Hb_000465_430 Hb_000465_430 Hb_000349_060--Hb_000465_430 Hb_000084_290 Hb_000084_290 Hb_002983_010--Hb_000084_290 Hb_003687_110 Hb_003687_110 Hb_002983_010--Hb_003687_110 Hb_002983_010--Hb_000349_060 Hb_003939_080 Hb_003939_080 Hb_002983_010--Hb_003939_080 Hb_001369_660 Hb_001369_660 Hb_002983_010--Hb_001369_660 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_001358_030--Hb_105386_010 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_000189_340 Hb_000189_340 Hb_001358_030--Hb_000189_340 Hb_001301_160--Hb_096563_010 Hb_002007_060 Hb_002007_060 Hb_001301_160--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_001301_160--Hb_011571_020 Hb_001511_020 Hb_001511_020 Hb_001301_160--Hb_001511_020 Hb_000661_250 Hb_000661_250 Hb_001301_160--Hb_000661_250 Hb_000230_200 Hb_000230_200 Hb_001301_160--Hb_000230_200 Hb_148912_010 Hb_148912_010 Hb_003038_030--Hb_148912_010 Hb_002411_170 Hb_002411_170 Hb_003038_030--Hb_002411_170 Hb_141131_010 Hb_141131_010 Hb_003038_030--Hb_141131_010 Hb_000019_230 Hb_000019_230 Hb_003038_030--Hb_000019_230 Hb_000172_370 Hb_000172_370 Hb_003038_030--Hb_000172_370 Hb_004545_060 Hb_004545_060 Hb_003038_030--Hb_004545_060 Hb_004310_020 Hb_004310_020 Hb_000060_040--Hb_004310_020 Hb_010712_030 Hb_010712_030 Hb_000060_040--Hb_010712_030 Hb_000796_210 Hb_000796_210 Hb_000060_040--Hb_000796_210 Hb_000060_040--Hb_001358_030 Hb_000343_160 Hb_000343_160 Hb_000060_040--Hb_000343_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
228.665 153.853 108.295 154.956 235.96 324.053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
210.436 330.283 174.081 70.7978 36.5018

CAGE analysis