Hb_000780_160

Information

Type -
Description -
Location Contig780: 163450-163827
Sequence    

Annotation

kegg
ID rcu:RCOM_0483300
description hypothetical protein
nr
ID XP_002531695.1
description hypothetical protein RCOM_0483300 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0C6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0483300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57921: 163417-163996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000780_160 0.0 - - hypothetical protein RCOM_0483300 [Ricinus communis]
2 Hb_004126_050 0.0689748095 - - PREDICTED: L-type lectin-domain containing receptor kinase VII.1 [Tarenaya hassleriana]
3 Hb_006243_010 0.0802152168 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
4 Hb_171900_110 0.0898785403 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
5 Hb_000039_120 0.1165450904 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
6 Hb_000032_590 0.1214118512 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
7 Hb_019863_050 0.1241210211 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
8 Hb_000311_110 0.1243186224 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_005240_010 0.1262982246 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
10 Hb_000061_440 0.1271336404 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_002211_020 0.1282554789 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
12 Hb_022487_010 0.1328485876 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
13 Hb_005337_140 0.138013691 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
14 Hb_000049_290 0.1501459417 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
15 Hb_000668_180 0.1516160639 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
16 Hb_132259_010 0.1518218525 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
17 Hb_000140_220 0.1530547839 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
18 Hb_011028_030 0.1538822088 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000112_040 0.1546877828 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_000369_040 0.1547449928 - - Ankyrin repeat family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000780_160 Hb_000780_160 Hb_004126_050 Hb_004126_050 Hb_000780_160--Hb_004126_050 Hb_006243_010 Hb_006243_010 Hb_000780_160--Hb_006243_010 Hb_171900_110 Hb_171900_110 Hb_000780_160--Hb_171900_110 Hb_000039_120 Hb_000039_120 Hb_000780_160--Hb_000039_120 Hb_000032_590 Hb_000032_590 Hb_000780_160--Hb_000032_590 Hb_019863_050 Hb_019863_050 Hb_000780_160--Hb_019863_050 Hb_004126_050--Hb_006243_010 Hb_005337_140 Hb_005337_140 Hb_004126_050--Hb_005337_140 Hb_005240_010 Hb_005240_010 Hb_004126_050--Hb_005240_010 Hb_004126_050--Hb_171900_110 Hb_000061_440 Hb_000061_440 Hb_004126_050--Hb_000061_440 Hb_006243_010--Hb_005337_140 Hb_000186_180 Hb_000186_180 Hb_006243_010--Hb_000186_180 Hb_006243_010--Hb_000061_440 Hb_006243_010--Hb_019863_050 Hb_171900_110--Hb_000032_590 Hb_171900_110--Hb_005240_010 Hb_000112_040 Hb_000112_040 Hb_171900_110--Hb_000112_040 Hb_171900_110--Hb_000039_120 Hb_000039_120--Hb_000032_590 Hb_000311_110 Hb_000311_110 Hb_000039_120--Hb_000311_110 Hb_001999_050 Hb_001999_050 Hb_000039_120--Hb_001999_050 Hb_000039_120--Hb_004126_050 Hb_006358_030 Hb_006358_030 Hb_000032_590--Hb_006358_030 Hb_000032_590--Hb_005240_010 Hb_005772_020 Hb_005772_020 Hb_000032_590--Hb_005772_020 Hb_115114_010 Hb_115114_010 Hb_000032_590--Hb_115114_010 Hb_132259_010 Hb_132259_010 Hb_000032_590--Hb_132259_010 Hb_011028_030 Hb_011028_030 Hb_019863_050--Hb_011028_030 Hb_033363_030 Hb_033363_030 Hb_019863_050--Hb_033363_030 Hb_002211_020 Hb_002211_020 Hb_019863_050--Hb_002211_020 Hb_000072_240 Hb_000072_240 Hb_019863_050--Hb_000072_240 Hb_046739_010 Hb_046739_010 Hb_019863_050--Hb_046739_010 Hb_000031_320 Hb_000031_320 Hb_019863_050--Hb_000031_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0936863 21.3086 11.041 9.31467 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.683047 33.4487

CAGE analysis