Hb_000780_170

Information

Type -
Description -
Location Contig780: 181919-185844
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16270g
description POPTRDRAFT_1099983; hypothetical protein
nr
ID XP_012081432.1
description PREDICTED: OBERON-like protein [Jatropha curcas]
swissprot
ID Q9LUB7
description Protein OBERON 2 OS=Arabidopsis thaliana GN=OBE2 PE=1 SV=1
trembl
ID A0A067K199
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18476 PE=4 SV=1
Gene Ontology
ID GO:0008270
description oberon-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57922: 182047-185839
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000780_170 0.0 - - PREDICTED: OBERON-like protein [Jatropha curcas]
2 Hb_008253_030 0.0606211513 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
3 Hb_000120_660 0.0719290301 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
4 Hb_001033_050 0.072000651 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
5 Hb_001147_110 0.0723051218 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
6 Hb_000418_140 0.0748470551 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
7 Hb_000046_070 0.0777983994 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_009780_100 0.0785245497 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
9 Hb_007894_130 0.0786942853 - - hypothetical protein RCOM_0584960 [Ricinus communis]
10 Hb_000162_280 0.0795793296 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
11 Hb_008103_020 0.0813157904 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
12 Hb_001767_140 0.0817895601 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
13 Hb_004629_010 0.0830175811 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
14 Hb_006615_120 0.0835602472 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
15 Hb_003373_040 0.084030081 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
16 Hb_007508_080 0.0840538453 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
17 Hb_005104_010 0.0856408369 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
18 Hb_010712_090 0.086110992 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
19 Hb_002615_090 0.0869138582 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
20 Hb_004129_070 0.0871779765 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000780_170 Hb_000780_170 Hb_008253_030 Hb_008253_030 Hb_000780_170--Hb_008253_030 Hb_000120_660 Hb_000120_660 Hb_000780_170--Hb_000120_660 Hb_001033_050 Hb_001033_050 Hb_000780_170--Hb_001033_050 Hb_001147_110 Hb_001147_110 Hb_000780_170--Hb_001147_110 Hb_000418_140 Hb_000418_140 Hb_000780_170--Hb_000418_140 Hb_000046_070 Hb_000046_070 Hb_000780_170--Hb_000046_070 Hb_001767_140 Hb_001767_140 Hb_008253_030--Hb_001767_140 Hb_002253_080 Hb_002253_080 Hb_008253_030--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_008253_030--Hb_002267_140 Hb_008253_030--Hb_001147_110 Hb_000479_220 Hb_000479_220 Hb_008253_030--Hb_000479_220 Hb_002276_240 Hb_002276_240 Hb_008253_030--Hb_002276_240 Hb_003729_030 Hb_003729_030 Hb_000120_660--Hb_003729_030 Hb_004629_010 Hb_004629_010 Hb_000120_660--Hb_004629_010 Hb_157966_010 Hb_157966_010 Hb_000120_660--Hb_157966_010 Hb_005104_010 Hb_005104_010 Hb_000120_660--Hb_005104_010 Hb_000120_660--Hb_008253_030 Hb_004129_070 Hb_004129_070 Hb_001033_050--Hb_004129_070 Hb_000139_130 Hb_000139_130 Hb_001033_050--Hb_000139_130 Hb_004668_060 Hb_004668_060 Hb_001033_050--Hb_004668_060 Hb_001135_120 Hb_001135_120 Hb_001033_050--Hb_001135_120 Hb_008253_020 Hb_008253_020 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090 Hb_000162_030 Hb_000162_030 Hb_001147_110--Hb_000162_030 Hb_001147_110--Hb_002276_240 Hb_001147_110--Hb_001767_140 Hb_184798_080 Hb_184798_080 Hb_001147_110--Hb_184798_080 Hb_002325_040 Hb_002325_040 Hb_001147_110--Hb_002325_040 Hb_003633_070 Hb_003633_070 Hb_000418_140--Hb_003633_070 Hb_001143_250 Hb_001143_250 Hb_000418_140--Hb_001143_250 Hb_000162_280 Hb_000162_280 Hb_000418_140--Hb_000162_280 Hb_009112_010 Hb_009112_010 Hb_000418_140--Hb_009112_010 Hb_000796_190 Hb_000796_190 Hb_000418_140--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_000418_140--Hb_007558_120 Hb_002081_120 Hb_002081_120 Hb_000046_070--Hb_002081_120 Hb_000046_070--Hb_001147_110 Hb_000879_160 Hb_000879_160 Hb_000046_070--Hb_000879_160 Hb_000046_070--Hb_001033_050 Hb_000046_070--Hb_004668_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.6468 78.8409 32.3603 40.8295 41.517 53.8598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.7324 16.6189 25.7895 29.7316 25.6176

CAGE analysis