Hb_000780_210

Information

Type -
Description -
Location Contig780: 229226-231962
Sequence    

Annotation

kegg
ID cic:CICLE_v10017136mg
description hypothetical protein
nr
ID XP_012081429.1
description PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
swissprot
ID A4K526
description Transmembrane protein 256 homolog OS=Bufo gargarizans PE=3 SV=1
trembl
ID A0A067K0Z6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57928: 229352-231700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000780_210 0.0 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
2 Hb_001377_380 0.0552289799 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
3 Hb_000635_080 0.0654062571 - - 60S ribosomal protein L17A [Hevea brasiliensis]
4 Hb_183086_040 0.0783284915 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
5 Hb_000820_130 0.0833927388 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
6 Hb_002316_120 0.0873571463 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
7 Hb_012539_020 0.0907553714 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
8 Hb_000215_180 0.0960967978 - - hypothetical protein 17 [Hevea brasiliensis]
9 Hb_000789_110 0.0974802811 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
10 Hb_002248_100 0.1021450125 - - hypothetical protein VITISV_027197 [Vitis vinifera]
11 Hb_000069_140 0.1024276749 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
12 Hb_000300_390 0.104335991 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
13 Hb_001700_020 0.1047098725 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
14 Hb_000163_130 0.1050899283 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
15 Hb_001780_050 0.1079239389 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
16 Hb_001623_430 0.1079627357 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
17 Hb_000389_080 0.1080785562 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
18 Hb_004223_260 0.1094336712 - - hypothetical protein F383_09277 [Gossypium arboreum]
19 Hb_000224_090 0.1096995534 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
20 Hb_000260_200 0.1104398184 - - -

Gene co-expression network

sample Hb_000780_210 Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000780_210--Hb_001377_380 Hb_000635_080 Hb_000635_080 Hb_000780_210--Hb_000635_080 Hb_183086_040 Hb_183086_040 Hb_000780_210--Hb_183086_040 Hb_000820_130 Hb_000820_130 Hb_000780_210--Hb_000820_130 Hb_002316_120 Hb_002316_120 Hb_000780_210--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_000780_210--Hb_012539_020 Hb_001377_380--Hb_000635_080 Hb_001377_380--Hb_002316_120 Hb_004545_130 Hb_004545_130 Hb_001377_380--Hb_004545_130 Hb_000789_110 Hb_000789_110 Hb_001377_380--Hb_000789_110 Hb_000300_390 Hb_000300_390 Hb_001377_380--Hb_000300_390 Hb_002248_100 Hb_002248_100 Hb_000635_080--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000635_080--Hb_006588_080 Hb_000635_080--Hb_004545_130 Hb_000635_080--Hb_002316_120 Hb_000922_100 Hb_000922_100 Hb_183086_040--Hb_000922_100 Hb_000896_120 Hb_000896_120 Hb_183086_040--Hb_000896_120 Hb_000215_180 Hb_000215_180 Hb_183086_040--Hb_000215_180 Hb_000085_330 Hb_000085_330 Hb_183086_040--Hb_000085_330 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090 Hb_000820_130--Hb_002316_120 Hb_000820_130--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_000820_130--Hb_000270_720 Hb_000367_210 Hb_000367_210 Hb_000820_130--Hb_000367_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130 Hb_002316_120--Hb_000789_110 Hb_002316_120--Hb_000300_390 Hb_002316_120--Hb_000270_720 Hb_002316_120--Hb_012539_020 Hb_004007_180 Hb_004007_180 Hb_002316_120--Hb_004007_180 Hb_000389_080 Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_005914_200 Hb_005914_200 Hb_012539_020--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_012539_020--Hb_001780_050 Hb_012539_020--Hb_000300_390 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6514 2.83004 4.68054 17.6964 11.4869 19.8714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.1212 116.478 43.2801 28.6448 8.41366

CAGE analysis