Hb_000780_230

Information

Type transcription factor
Description TF Family: WRKY
Location Contig780: 245797-250215
Sequence    

Annotation

kegg
ID rcu:RCOM_1120400
description WRKY transcription factor, putative
nr
ID AEE81757.1
description WRKY protein [Hevea brasiliensis]
swissprot
ID Q9SI37
description WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1
trembl
ID F6M7Y7
description WRKY protein OS=Hevea brasiliensis GN=WRKY1 PE=2 SV=1
Gene Ontology
ID GO:0003700
description wrky transcription factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57933: 245894-250023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000780_230 0.0 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
2 Hb_000152_380 0.0573381412 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
3 Hb_000796_030 0.0573475173 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
4 Hb_002025_020 0.0573764262 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
5 Hb_013399_100 0.0579670263 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001409_020 0.0649783963 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
7 Hb_000366_120 0.0671486345 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
8 Hb_010618_010 0.0674521457 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
9 Hb_004195_200 0.0690890103 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
10 Hb_167498_010 0.0692159107 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
11 Hb_000060_090 0.070027856 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
12 Hb_009545_100 0.0705270012 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
13 Hb_007416_180 0.0705273743 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
14 Hb_003058_190 0.0710922448 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
15 Hb_002518_280 0.0714302864 - - phosphate transporter [Manihot esculenta]
16 Hb_002248_080 0.0735639417 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
17 Hb_021409_040 0.0744480398 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
18 Hb_001818_070 0.074742906 - - carbon catabolite repressor protein, putative [Ricinus communis]
19 Hb_007254_070 0.0749116041 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
20 Hb_005731_030 0.0749983475 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]

Gene co-expression network

sample Hb_000780_230 Hb_000780_230 Hb_000152_380 Hb_000152_380 Hb_000780_230--Hb_000152_380 Hb_000796_030 Hb_000796_030 Hb_000780_230--Hb_000796_030 Hb_002025_020 Hb_002025_020 Hb_000780_230--Hb_002025_020 Hb_013399_100 Hb_013399_100 Hb_000780_230--Hb_013399_100 Hb_001409_020 Hb_001409_020 Hb_000780_230--Hb_001409_020 Hb_000366_120 Hb_000366_120 Hb_000780_230--Hb_000366_120 Hb_002518_280 Hb_002518_280 Hb_000152_380--Hb_002518_280 Hb_004310_150 Hb_004310_150 Hb_000152_380--Hb_004310_150 Hb_010618_010 Hb_010618_010 Hb_000152_380--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000152_380--Hb_001248_060 Hb_004221_020 Hb_004221_020 Hb_000152_380--Hb_004221_020 Hb_009503_030 Hb_009503_030 Hb_000796_030--Hb_009503_030 Hb_000796_030--Hb_002025_020 Hb_003029_110 Hb_003029_110 Hb_000796_030--Hb_003029_110 Hb_014267_010 Hb_014267_010 Hb_000796_030--Hb_014267_010 Hb_009545_100 Hb_009545_100 Hb_000796_030--Hb_009545_100 Hb_000347_070 Hb_000347_070 Hb_002025_020--Hb_000347_070 Hb_002025_020--Hb_009545_100 Hb_003158_010 Hb_003158_010 Hb_002025_020--Hb_003158_010 Hb_002835_370 Hb_002835_370 Hb_002025_020--Hb_002835_370 Hb_002025_020--Hb_004221_020 Hb_013399_100--Hb_001409_020 Hb_000060_090 Hb_000060_090 Hb_013399_100--Hb_000060_090 Hb_105105_020 Hb_105105_020 Hb_013399_100--Hb_105105_020 Hb_003504_030 Hb_003504_030 Hb_013399_100--Hb_003504_030 Hb_013399_100--Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001409_020--Hb_001248_060 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_000366_120--Hb_007576_110 Hb_021409_040 Hb_021409_040 Hb_000366_120--Hb_021409_040 Hb_004195_200 Hb_004195_200 Hb_000366_120--Hb_004195_200 Hb_014497_050 Hb_014497_050 Hb_000366_120--Hb_014497_050 Hb_000366_120--Hb_001409_020 Hb_000789_310 Hb_000789_310 Hb_000366_120--Hb_000789_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0707 27.7607 14.5442 16.9867 32.0592 24.323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7556 20.5885 27.8377 17.2818 16.6377

CAGE analysis