Hb_000783_010

Information

Type -
Description -
Location Contig783: 85658-99113
Sequence    

Annotation

kegg
ID tcc:TCM_043259
description Ras-related small GTP-binding family protein isoform 1
nr
ID XP_012080957.1
description PREDICTED: ras-related protein RABF1 [Jatropha curcas]
swissprot
ID Q9CB01
description Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1 SV=1
trembl
ID A0A067KF37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16153 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabf1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58016: 90621-99238
cDNA
(Sanger)
(ID:Location)		 009_A20.ab1: 90664-98194 , 039_N01.ab1: 90842-99238 , 040_G02.ab1: 90763-99238

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000783_010 0.0 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
2 Hb_000510_300 0.0592563802 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
3 Hb_000200_020 0.0656756207 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
4 Hb_001366_370 0.0690300185 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
5 Hb_000720_040 0.0703267057 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
6 Hb_011628_060 0.07157158 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
7 Hb_000331_180 0.0751517341 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640220 [Jatropha curcas]
8 Hb_005489_060 0.0758516841 - - Anamorsin, putative [Ricinus communis]
9 Hb_000453_160 0.0794603672 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
10 Hb_007878_010 0.0800355591 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
11 Hb_004108_220 0.0800695602 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
12 Hb_000116_270 0.0811208163 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
13 Hb_052805_010 0.0814441014 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
14 Hb_154948_040 0.0828414797 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
15 Hb_002217_350 0.0836129785 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
16 Hb_161574_020 0.0847770978 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
17 Hb_001159_130 0.0860425858 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
18 Hb_001584_120 0.0879188233 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
19 Hb_002936_010 0.0890160028 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
20 Hb_000300_500 0.0897202087 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]

Gene co-expression network

sample Hb_000783_010 Hb_000783_010 Hb_000510_300 Hb_000510_300 Hb_000783_010--Hb_000510_300 Hb_000200_020 Hb_000200_020 Hb_000783_010--Hb_000200_020 Hb_001366_370 Hb_001366_370 Hb_000783_010--Hb_001366_370 Hb_000720_040 Hb_000720_040 Hb_000783_010--Hb_000720_040 Hb_011628_060 Hb_011628_060 Hb_000783_010--Hb_011628_060 Hb_000331_180 Hb_000331_180 Hb_000783_010--Hb_000331_180 Hb_001703_060 Hb_001703_060 Hb_000510_300--Hb_001703_060 Hb_001427_160 Hb_001427_160 Hb_000510_300--Hb_001427_160 Hb_168978_010 Hb_168978_010 Hb_000510_300--Hb_168978_010 Hb_000510_300--Hb_000720_040 Hb_000510_300--Hb_001366_370 Hb_000116_270 Hb_000116_270 Hb_000200_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_000200_020--Hb_000599_250 Hb_000200_020--Hb_001366_370 Hb_001159_130 Hb_001159_130 Hb_000200_020--Hb_001159_130 Hb_001218_030 Hb_001218_030 Hb_000200_020--Hb_001218_030 Hb_002053_140 Hb_002053_140 Hb_001366_370--Hb_002053_140 Hb_001366_370--Hb_001427_160 Hb_009787_030 Hb_009787_030 Hb_001366_370--Hb_009787_030 Hb_000300_500 Hb_000300_500 Hb_000720_040--Hb_000300_500 Hb_003994_230 Hb_003994_230 Hb_000720_040--Hb_003994_230 Hb_052805_010 Hb_052805_010 Hb_000720_040--Hb_052805_010 Hb_002936_010 Hb_002936_010 Hb_000720_040--Hb_002936_010 Hb_000948_230 Hb_000948_230 Hb_000720_040--Hb_000948_230 Hb_172632_100 Hb_172632_100 Hb_011628_060--Hb_172632_100 Hb_003528_030 Hb_003528_030 Hb_011628_060--Hb_003528_030 Hb_008616_050 Hb_008616_050 Hb_011628_060--Hb_008616_050 Hb_011628_060--Hb_000200_020 Hb_004109_340 Hb_004109_340 Hb_011628_060--Hb_004109_340 Hb_000034_070 Hb_000034_070 Hb_000331_180--Hb_000034_070 Hb_032808_010 Hb_032808_010 Hb_000331_180--Hb_032808_010 Hb_000331_180--Hb_001366_370 Hb_000331_180--Hb_000510_300 Hb_002445_060 Hb_002445_060 Hb_000331_180--Hb_002445_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.7338 25.7533 46.2373 69.8528 23.696 48.2943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.3708 64.7469 45.6656 50.2468 25.0674

CAGE analysis