Hb_000783_020

Information

Type -
Description -
Location Contig783: 103819-114700
Sequence    

Annotation

kegg
ID rcu:RCOM_0722140
description glycerol-3-phosphate dehydrogenase, putative (EC:1.1.3.21)
nr
ID XP_012080960.1
description PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
swissprot
ID Q9SS48
description Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial OS=Arabidopsis thaliana GN=SDP6 PE=1 SV=1
trembl
ID A0A067K2M6
description Glycerol-3-phosphate dehydrogenase OS=Jatropha curcas GN=JCGZ_16155 PE=3 SV=1
Gene Ontology
ID GO:0009331
description glycerol-3-phosphate dehydrogenase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58017: 103852-114619 , PASA_asmbl_58018: 112498-113131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000783_020 0.0 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
2 Hb_000985_030 0.0544385365 - - PREDICTED: RRP15-like protein [Populus euphratica]
3 Hb_003053_020 0.0548778169 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
4 Hb_001489_080 0.0604448318 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_003688_150 0.0653199104 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
6 Hb_003697_040 0.0661565757 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
7 Hb_007416_060 0.0679527091 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
8 Hb_000066_080 0.0743476758 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
9 Hb_000120_460 0.0755869087 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
10 Hb_001726_020 0.0759798481 - - PREDICTED: endophilin-A1 [Jatropha curcas]
11 Hb_004934_100 0.0770866035 - - conserved hypothetical protein [Ricinus communis]
12 Hb_029510_050 0.0783915461 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
13 Hb_002408_020 0.0792665401 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
14 Hb_002046_180 0.0800856641 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
15 Hb_000165_160 0.0809041425 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
16 Hb_164010_030 0.0810758901 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
17 Hb_001318_270 0.0819108304 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
18 Hb_002620_020 0.0831647463 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
19 Hb_000260_030 0.0832328064 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
20 Hb_000749_220 0.0832607299 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000783_020 Hb_000783_020 Hb_000985_030 Hb_000985_030 Hb_000783_020--Hb_000985_030 Hb_003053_020 Hb_003053_020 Hb_000783_020--Hb_003053_020 Hb_001489_080 Hb_001489_080 Hb_000783_020--Hb_001489_080 Hb_003688_150 Hb_003688_150 Hb_000783_020--Hb_003688_150 Hb_003697_040 Hb_003697_040 Hb_000783_020--Hb_003697_040 Hb_007416_060 Hb_007416_060 Hb_000783_020--Hb_007416_060 Hb_000985_030--Hb_001489_080 Hb_002169_040 Hb_002169_040 Hb_000985_030--Hb_002169_040 Hb_000777_040 Hb_000777_040 Hb_000985_030--Hb_000777_040 Hb_005269_070 Hb_005269_070 Hb_000985_030--Hb_005269_070 Hb_004934_100 Hb_004934_100 Hb_000985_030--Hb_004934_100 Hb_003053_020--Hb_003697_040 Hb_019263_020 Hb_019263_020 Hb_003053_020--Hb_019263_020 Hb_003053_020--Hb_000985_030 Hb_007904_260 Hb_007904_260 Hb_003053_020--Hb_007904_260 Hb_011534_030 Hb_011534_030 Hb_003053_020--Hb_011534_030 Hb_001489_080--Hb_004934_100 Hb_000599_250 Hb_000599_250 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_001489_080--Hb_002169_040 Hb_000120_460 Hb_000120_460 Hb_003688_150--Hb_000120_460 Hb_001619_070 Hb_001619_070 Hb_003688_150--Hb_001619_070 Hb_001318_270 Hb_001318_270 Hb_003688_150--Hb_001318_270 Hb_103118_010 Hb_103118_010 Hb_003688_150--Hb_103118_010 Hb_086639_040 Hb_086639_040 Hb_003688_150--Hb_086639_040 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_005488_200 Hb_005488_200 Hb_007416_060--Hb_005488_200 Hb_000116_260 Hb_000116_260 Hb_007416_060--Hb_000116_260 Hb_007416_060--Hb_001489_080 Hb_003376_250 Hb_003376_250 Hb_007416_060--Hb_003376_250 Hb_000436_130 Hb_000436_130 Hb_007416_060--Hb_000436_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.75364 3.01738 3.34744 4.21717 4.11484 4.94766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.29761 7.41235 9.18506 5.0295 5.90939

CAGE analysis