Hb_000783_030

Information

Type -
Description -
Location Contig783: 116622-124141
Sequence    

Annotation

kegg
ID rcu:RCOM_1299530
description tfiif-alpha, putative
nr
ID XP_002519387.1
description tfiif-alpha, putative [Ricinus communis]
swissprot
ID Q9SU25
description Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 PE=1 SV=1
trembl
ID B9S068
description Tfiif-alpha, putative OS=Ricinus communis GN=RCOM_1299530 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor iif subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000783_030 0.0 - - tfiif-alpha, putative [Ricinus communis]
2 Hb_032496_010 0.2169183348 - - hypothetical protein POPTR_0012s10850g [Populus trichocarpa]
3 Hb_082793_010 0.2332745059 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002748_030 0.2414734926 - - nucleotide binding protein, putative [Ricinus communis]
5 Hb_000011_290 0.2465677925 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
6 Hb_002908_060 0.2470906876 - - unnamed protein product, partial [Coffea canephora]
7 Hb_000216_030 0.247271057 - - aldehyde oxidase, putative [Ricinus communis]
8 Hb_004411_060 0.2479187951 - - acetolactate synthase, putative [Ricinus communis]
9 Hb_181026_010 0.2523953808 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
10 Hb_000631_070 0.2548368681 transcription factor TF Family: C2H2 PREDICTED: histone deacetylase 5 [Jatropha curcas]
11 Hb_001911_060 0.2561222972 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
12 Hb_163975_010 0.2590053737 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
13 Hb_006268_020 0.2620397657 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
14 Hb_003098_080 0.2630283194 - - -
15 Hb_001971_060 0.2659539297 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
16 Hb_000950_010 0.2683515143 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
17 Hb_000364_160 0.2694075091 - - PREDICTED: uncharacterized protein LOC105639754 [Jatropha curcas]
18 Hb_000203_260 0.271305288 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]
19 Hb_004586_160 0.271837938 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
20 Hb_001673_100 0.2738271016 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]

Gene co-expression network

sample Hb_000783_030 Hb_000783_030 Hb_032496_010 Hb_032496_010 Hb_000783_030--Hb_032496_010 Hb_082793_010 Hb_082793_010 Hb_000783_030--Hb_082793_010 Hb_002748_030 Hb_002748_030 Hb_000783_030--Hb_002748_030 Hb_000011_290 Hb_000011_290 Hb_000783_030--Hb_000011_290 Hb_002908_060 Hb_002908_060 Hb_000783_030--Hb_002908_060 Hb_000216_030 Hb_000216_030 Hb_000783_030--Hb_000216_030 Hb_000512_070 Hb_000512_070 Hb_032496_010--Hb_000512_070 Hb_006268_020 Hb_006268_020 Hb_032496_010--Hb_006268_020 Hb_001523_020 Hb_001523_020 Hb_032496_010--Hb_001523_020 Hb_130194_010 Hb_130194_010 Hb_032496_010--Hb_130194_010 Hb_029888_010 Hb_029888_010 Hb_032496_010--Hb_029888_010 Hb_163975_010 Hb_163975_010 Hb_082793_010--Hb_163975_010 Hb_002748_020 Hb_002748_020 Hb_082793_010--Hb_002748_020 Hb_004411_060 Hb_004411_060 Hb_082793_010--Hb_004411_060 Hb_084670_010 Hb_084670_010 Hb_082793_010--Hb_084670_010 Hb_012678_010 Hb_012678_010 Hb_082793_010--Hb_012678_010 Hb_082793_010--Hb_002908_060 Hb_142343_010 Hb_142343_010 Hb_002748_030--Hb_142343_010 Hb_002311_340 Hb_002311_340 Hb_002748_030--Hb_002311_340 Hb_001157_110 Hb_001157_110 Hb_002748_030--Hb_001157_110 Hb_000020_120 Hb_000020_120 Hb_002748_030--Hb_000020_120 Hb_002748_030--Hb_163975_010 Hb_000327_160 Hb_000327_160 Hb_002748_030--Hb_000327_160 Hb_001699_200 Hb_001699_200 Hb_000011_290--Hb_001699_200 Hb_007943_160 Hb_007943_160 Hb_000011_290--Hb_007943_160 Hb_004079_080 Hb_004079_080 Hb_000011_290--Hb_004079_080 Hb_001971_060 Hb_001971_060 Hb_000011_290--Hb_001971_060 Hb_000061_090 Hb_000061_090 Hb_000011_290--Hb_000061_090 Hb_002539_020 Hb_002539_020 Hb_000011_290--Hb_002539_020 Hb_000950_010 Hb_000950_010 Hb_002908_060--Hb_000950_010 Hb_000053_060 Hb_000053_060 Hb_002908_060--Hb_000053_060 Hb_001673_100 Hb_001673_100 Hb_002908_060--Hb_001673_100 Hb_004870_040 Hb_004870_040 Hb_002908_060--Hb_004870_040 Hb_007383_020 Hb_007383_020 Hb_002908_060--Hb_007383_020 Hb_003098_080 Hb_003098_080 Hb_002908_060--Hb_003098_080 Hb_006916_190 Hb_006916_190 Hb_000216_030--Hb_006916_190 Hb_044380_020 Hb_044380_020 Hb_000216_030--Hb_044380_020 Hb_001086_030 Hb_001086_030 Hb_000216_030--Hb_001086_030 Hb_003517_010 Hb_003517_010 Hb_000216_030--Hb_003517_010 Hb_008749_090 Hb_008749_090 Hb_000216_030--Hb_008749_090 Hb_001123_010 Hb_001123_010 Hb_000216_030--Hb_001123_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0241461 0.0119991 0.192357 0.252127 0.216369 0.355297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137377 0.237786 0.978648 1.74048 0.908443

CAGE analysis