Hb_000784_040

Information

Type -
Description -
Location Contig784: 78883-79122
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11550g
description hypothetical protein
nr
ID XP_006376273.1
description hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
swissprot
ID P33083
description Auxin-induced protein 6B OS=Glycine max PE=2 SV=1
trembl
ID B9MW97
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11550g PE=4 SV=1
Gene Ontology
ID GO:0005634
description auxin-induced protein 15a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000784_040 0.0 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
2 Hb_000227_200 0.1176892532 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
3 Hb_091433_040 0.163232007 - - PREDICTED: josephin-like protein [Jatropha curcas]
4 Hb_000995_070 0.1717320644 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_042223_010 0.1796633504 - - Protein Z, putative [Ricinus communis]
6 Hb_005914_070 0.1864591128 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003599_070 0.1901434403 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_003786_090 0.1916520458 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
9 Hb_001587_210 0.1934741602 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
10 Hb_000172_570 0.1944694887 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
11 Hb_010174_070 0.1960209577 - - -
12 Hb_001741_040 0.2038095493 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
13 Hb_000450_020 0.2044817941 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000111_010 0.2060028948 - - DNA-directed RNA polymerase, putative [Ricinus communis]
15 Hb_000972_010 0.2138614795 - - PREDICTED: kinesin KP1 [Jatropha curcas]
16 Hb_100873_030 0.2140021138 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
17 Hb_003086_130 0.2189161005 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_156473_010 0.219577233 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
19 Hb_001114_340 0.2254384952 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
20 Hb_001391_140 0.2336373728 - - PREDICTED: uncharacterized protein LOC101293660 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000784_040 Hb_000784_040 Hb_000227_200 Hb_000227_200 Hb_000784_040--Hb_000227_200 Hb_091433_040 Hb_091433_040 Hb_000784_040--Hb_091433_040 Hb_000995_070 Hb_000995_070 Hb_000784_040--Hb_000995_070 Hb_042223_010 Hb_042223_010 Hb_000784_040--Hb_042223_010 Hb_005914_070 Hb_005914_070 Hb_000784_040--Hb_005914_070 Hb_003599_070 Hb_003599_070 Hb_000784_040--Hb_003599_070 Hb_001587_210 Hb_001587_210 Hb_000227_200--Hb_001587_210 Hb_000227_200--Hb_005914_070 Hb_001741_040 Hb_001741_040 Hb_000227_200--Hb_001741_040 Hb_000227_200--Hb_091433_040 Hb_000227_200--Hb_042223_010 Hb_091433_040--Hb_005914_070 Hb_113906_010 Hb_113906_010 Hb_091433_040--Hb_113906_010 Hb_000450_020 Hb_000450_020 Hb_091433_040--Hb_000450_020 Hb_000111_010 Hb_000111_010 Hb_091433_040--Hb_000111_010 Hb_100873_030 Hb_100873_030 Hb_000995_070--Hb_100873_030 Hb_001114_340 Hb_001114_340 Hb_000995_070--Hb_001114_340 Hb_002073_120 Hb_002073_120 Hb_000995_070--Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_000995_070--Hb_000172_570 Hb_010417_010 Hb_010417_010 Hb_000995_070--Hb_010417_010 Hb_156473_010 Hb_156473_010 Hb_042223_010--Hb_156473_010 Hb_042223_010--Hb_100873_030 Hb_000042_240 Hb_000042_240 Hb_042223_010--Hb_000042_240 Hb_042223_010--Hb_001587_210 Hb_003052_040 Hb_003052_040 Hb_005914_070--Hb_003052_040 Hb_005914_070--Hb_113906_010 Hb_005914_070--Hb_000111_010 Hb_001369_450 Hb_001369_450 Hb_005914_070--Hb_001369_450 Hb_000141_030 Hb_000141_030 Hb_003599_070--Hb_000141_030 Hb_000368_060 Hb_000368_060 Hb_003599_070--Hb_000368_060 Hb_000972_010 Hb_000972_010 Hb_003599_070--Hb_000972_010 Hb_000103_110 Hb_000103_110 Hb_003599_070--Hb_000103_110 Hb_003599_070--Hb_000172_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.52243 0 0 0 2.92879 0.68765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7609 48.3873 118.194 9.90378 0.74971

CAGE analysis