Hb_000784_060

Information

Type -
Description -
Location Contig784: 101469-105908
Sequence    

Annotation

kegg
ID rcu:RCOM_0685200
description hypothetical protein
nr
ID XP_002526802.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLD3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0685200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58038: 101735-104074 , PASA_asmbl_58039: 101916-102077 , PASA_asmbl_58040: 104122-105768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000784_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000665_210 0.0638942136 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
3 Hb_004466_090 0.0658270551 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009421_070 0.0711542683 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
5 Hb_001369_390 0.0715643472 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
6 Hb_004374_030 0.0719901275 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_016277_030 0.0788091213 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
8 Hb_004032_190 0.0894731667 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
9 Hb_000836_030 0.0929926104 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
10 Hb_002095_020 0.0947660758 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
11 Hb_002119_110 0.0972462851 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
12 Hb_000017_140 0.0979092418 - - polygalacturonase, putative [Ricinus communis]
13 Hb_000977_020 0.1008277744 - - beta-hexosaminidase, putative [Ricinus communis]
14 Hb_001206_100 0.1040973799 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
15 Hb_002518_230 0.1101170531 - - -
16 Hb_001296_060 0.1104221659 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
17 Hb_001098_040 0.1104896301 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
18 Hb_005183_100 0.1112259789 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
19 Hb_002284_060 0.1113637216 - - sugar transporter, putative [Ricinus communis]
20 Hb_000963_120 0.1132569787 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000784_060 Hb_000784_060 Hb_000665_210 Hb_000665_210 Hb_000784_060--Hb_000665_210 Hb_004466_090 Hb_004466_090 Hb_000784_060--Hb_004466_090 Hb_009421_070 Hb_009421_070 Hb_000784_060--Hb_009421_070 Hb_001369_390 Hb_001369_390 Hb_000784_060--Hb_001369_390 Hb_004374_030 Hb_004374_030 Hb_000784_060--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_000784_060--Hb_016277_030 Hb_000665_210--Hb_009421_070 Hb_001098_040 Hb_001098_040 Hb_000665_210--Hb_001098_040 Hb_000076_060 Hb_000076_060 Hb_000665_210--Hb_000076_060 Hb_000424_140 Hb_000424_140 Hb_000665_210--Hb_000424_140 Hb_000977_020 Hb_000977_020 Hb_000665_210--Hb_000977_020 Hb_004466_090--Hb_004374_030 Hb_004466_090--Hb_016277_030 Hb_002518_230 Hb_002518_230 Hb_004466_090--Hb_002518_230 Hb_000152_570 Hb_000152_570 Hb_004466_090--Hb_000152_570 Hb_004032_190 Hb_004032_190 Hb_004466_090--Hb_004032_190 Hb_001206_100 Hb_001206_100 Hb_009421_070--Hb_001206_100 Hb_009421_070--Hb_001098_040 Hb_005842_010 Hb_005842_010 Hb_009421_070--Hb_005842_010 Hb_009421_070--Hb_004032_190 Hb_002095_020 Hb_002095_020 Hb_001369_390--Hb_002095_020 Hb_001369_390--Hb_004374_030 Hb_001369_390--Hb_016277_030 Hb_000836_030 Hb_000836_030 Hb_001369_390--Hb_000836_030 Hb_001046_030 Hb_001046_030 Hb_001369_390--Hb_001046_030 Hb_004374_030--Hb_016277_030 Hb_000963_120 Hb_000963_120 Hb_004374_030--Hb_000963_120 Hb_002119_110 Hb_002119_110 Hb_004374_030--Hb_002119_110 Hb_004374_030--Hb_002095_020 Hb_005183_100 Hb_005183_100 Hb_016277_030--Hb_005183_100 Hb_016277_030--Hb_001206_100 Hb_016277_030--Hb_004032_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.98498 4.87843 11.1846 0.0107632 0.044971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0411506 0 2.86073 13.0335

CAGE analysis