Hb_000784_130

Information

Type -
Description -
Location Contig784: 261480-263716
Sequence    

Annotation

kegg
ID rcu:RCOM_0866620
description Casbene synthase, chloroplast precursor, putative (EC:4.2.3.8)
nr
ID KDP43261.1
description hypothetical protein JCGZ_22813 [Jatropha curcas]
swissprot
ID B9S1N2
description Probable terpene synthase 8 OS=Ricinus communis GN=TPS8 PE=3 SV=1
trembl
ID A0A067L487
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22813 PE=4 SV=1
Gene Ontology
ID GO:0010334
description casbene chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58052: 261641-262215
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000784_130 0.0 - - hypothetical protein JCGZ_22813 [Jatropha curcas]
2 Hb_003018_180 0.1237063817 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
3 Hb_002298_040 0.1246752324 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
4 Hb_002890_220 0.1258813576 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
5 Hb_000753_260 0.1266534363 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
6 Hb_000130_390 0.1396704749 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
7 Hb_004545_150 0.1405632993 - - PREDICTED: paramyosin [Jatropha curcas]
8 Hb_002924_050 0.1439134338 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
9 Hb_000264_190 0.1468460111 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
10 Hb_002609_260 0.1484042672 - - CCCH-type zinc finger protein [Hevea brasiliensis]
11 Hb_000304_020 0.1500753079 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
12 Hb_009662_030 0.155436276 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
13 Hb_010578_090 0.1571630457 - - HEV2.1 [Hevea brasiliensis]
14 Hb_113951_010 0.1581645737 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
15 Hb_029879_080 0.1584062077 - - unknown [Populus trichocarpa]
16 Hb_000720_180 0.1591241709 - - -
17 Hb_010931_100 0.159331067 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
18 Hb_001780_060 0.1611920529 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
19 Hb_114684_020 0.1630405417 - - beta-1,3-glucanase [Hevea brasiliensis]
20 Hb_010098_080 0.1639656352 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000784_130 Hb_000784_130 Hb_003018_180 Hb_003018_180 Hb_000784_130--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_000784_130--Hb_002298_040 Hb_002890_220 Hb_002890_220 Hb_000784_130--Hb_002890_220 Hb_000753_260 Hb_000753_260 Hb_000784_130--Hb_000753_260 Hb_000130_390 Hb_000130_390 Hb_000784_130--Hb_000130_390 Hb_004545_150 Hb_004545_150 Hb_000784_130--Hb_004545_150 Hb_003018_180--Hb_000130_390 Hb_001140_160 Hb_001140_160 Hb_003018_180--Hb_001140_160 Hb_000957_040 Hb_000957_040 Hb_003018_180--Hb_000957_040 Hb_003018_180--Hb_002298_040 Hb_003018_180--Hb_004545_150 Hb_001780_060 Hb_001780_060 Hb_003018_180--Hb_001780_060 Hb_000193_230 Hb_000193_230 Hb_002298_040--Hb_000193_230 Hb_000078_030 Hb_000078_030 Hb_002298_040--Hb_000078_030 Hb_005016_130 Hb_005016_130 Hb_002298_040--Hb_005016_130 Hb_010578_090 Hb_010578_090 Hb_002298_040--Hb_010578_090 Hb_029879_080 Hb_029879_080 Hb_002298_040--Hb_029879_080 Hb_000284_010 Hb_000284_010 Hb_002298_040--Hb_000284_010 Hb_002374_340 Hb_002374_340 Hb_002890_220--Hb_002374_340 Hb_000264_190 Hb_000264_190 Hb_002890_220--Hb_000264_190 Hb_017134_040 Hb_017134_040 Hb_002890_220--Hb_017134_040 Hb_002609_260 Hb_002609_260 Hb_002890_220--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_002890_220--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002890_220--Hb_005730_020 Hb_000753_260--Hb_002890_220 Hb_000753_260--Hb_002298_040 Hb_005298_030 Hb_005298_030 Hb_000753_260--Hb_005298_030 Hb_000753_260--Hb_002374_340 Hb_000753_260--Hb_029879_080 Hb_000130_390--Hb_000957_040 Hb_000130_390--Hb_002298_040 Hb_012347_010 Hb_012347_010 Hb_000130_390--Hb_012347_010 Hb_000130_390--Hb_001140_160 Hb_000130_390--Hb_005016_130 Hb_004545_150--Hb_010931_100 Hb_004545_150--Hb_002609_260 Hb_002989_080 Hb_002989_080 Hb_004545_150--Hb_002989_080 Hb_004545_150--Hb_000264_190 Hb_005488_100 Hb_005488_100 Hb_004545_150--Hb_005488_100 Hb_000563_540 Hb_000563_540 Hb_004545_150--Hb_000563_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9319 0.139489 0 0 8.94303 5.01996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8206 4.23596 7.73217 1.58376 0

CAGE analysis