Hb_000785_080

Information

Type -
Description -
Location Contig785: 145916-159480
Sequence    

Annotation

kegg
ID rcu:RCOM_1550840
description hypothetical protein
nr
ID XP_012086378.1
description PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
swissprot
ID Q6H7U2
description Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=Os02g0161200 PE=2 SV=1
trembl
ID A0A067K235
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22894 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58081: 153797-154207 , PASA_asmbl_58082: 157210-157652 , PASA_asmbl_58083: 144582-159376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000785_080 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
2 Hb_003641_060 0.0722960788 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
3 Hb_004934_070 0.086314372 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
4 Hb_000083_160 0.0930798718 - - Cell division cycle protein, putative [Ricinus communis]
5 Hb_003010_020 0.0973889141 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000038_080 0.0977760647 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
7 Hb_004881_020 0.1002044428 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
8 Hb_002737_070 0.1007022915 - - PREDICTED: phagocyte signaling-impaired protein [Jatropha curcas]
9 Hb_005731_120 0.1037861838 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
10 Hb_000271_090 0.1043773635 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_003916_010 0.1044519139 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
12 Hb_000521_120 0.1077968083 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_063716_080 0.1085356309 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
14 Hb_031284_040 0.1095154021 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
15 Hb_012799_130 0.1096877106 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
16 Hb_001025_110 0.1099584281 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010931_040 0.1105835271 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
18 Hb_006157_020 0.1131279493 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
19 Hb_002960_160 0.1136937592 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
20 Hb_011918_040 0.1139508483 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000785_080 Hb_000785_080 Hb_003641_060 Hb_003641_060 Hb_000785_080--Hb_003641_060 Hb_004934_070 Hb_004934_070 Hb_000785_080--Hb_004934_070 Hb_000083_160 Hb_000083_160 Hb_000785_080--Hb_000083_160 Hb_003010_020 Hb_003010_020 Hb_000785_080--Hb_003010_020 Hb_000038_080 Hb_000038_080 Hb_000785_080--Hb_000038_080 Hb_004881_020 Hb_004881_020 Hb_000785_080--Hb_004881_020 Hb_063716_080 Hb_063716_080 Hb_003641_060--Hb_063716_080 Hb_003641_060--Hb_004881_020 Hb_002255_030 Hb_002255_030 Hb_003641_060--Hb_002255_030 Hb_010931_040 Hb_010931_040 Hb_003641_060--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_003641_060--Hb_187739_020 Hb_005862_010 Hb_005862_010 Hb_004934_070--Hb_005862_010 Hb_002374_020 Hb_002374_020 Hb_004934_070--Hb_002374_020 Hb_004934_070--Hb_003641_060 Hb_004934_070--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_004934_070--Hb_144598_030 Hb_004935_030 Hb_004935_030 Hb_000083_160--Hb_004935_030 Hb_031284_040 Hb_031284_040 Hb_000083_160--Hb_031284_040 Hb_000271_090 Hb_000271_090 Hb_000083_160--Hb_000271_090 Hb_001617_060 Hb_001617_060 Hb_000083_160--Hb_001617_060 Hb_001635_090 Hb_001635_090 Hb_000083_160--Hb_001635_090 Hb_002235_170 Hb_002235_170 Hb_000083_160--Hb_002235_170 Hb_001416_070 Hb_001416_070 Hb_003010_020--Hb_001416_070 Hb_032050_040 Hb_032050_040 Hb_003010_020--Hb_032050_040 Hb_002273_120 Hb_002273_120 Hb_003010_020--Hb_002273_120 Hb_003438_050 Hb_003438_050 Hb_003010_020--Hb_003438_050 Hb_012194_050 Hb_012194_050 Hb_003010_020--Hb_012194_050 Hb_006909_070 Hb_006909_070 Hb_003010_020--Hb_006909_070 Hb_000236_310 Hb_000236_310 Hb_000038_080--Hb_000236_310 Hb_005731_120 Hb_005731_120 Hb_000038_080--Hb_005731_120 Hb_000038_080--Hb_004934_070 Hb_000031_220 Hb_000031_220 Hb_000038_080--Hb_000031_220 Hb_099878_030 Hb_099878_030 Hb_000038_080--Hb_099878_030 Hb_007594_130 Hb_007594_130 Hb_004881_020--Hb_007594_130 Hb_003952_070 Hb_003952_070 Hb_004881_020--Hb_003952_070 Hb_006252_040 Hb_006252_040 Hb_004881_020--Hb_006252_040 Hb_000212_240 Hb_000212_240 Hb_004881_020--Hb_000212_240 Hb_103012_010 Hb_103012_010 Hb_004881_020--Hb_103012_010 Hb_002671_100 Hb_002671_100 Hb_004881_020--Hb_002671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2507 10.1819 6.53012 12.3316 10.8726 27.5242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7242 11.0876 3.91741 13.8402 8.49058

CAGE analysis