Hb_000787_040

Information

Type -
Description -
Location Contig787: 63126-64099
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44530g
description hypothetical protein
nr
ID XP_011011271.1
description PREDICTED: uncharacterized protein LOC105115900 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5GXN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44530g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58115: 63497-64163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_040 0.0 - - PREDICTED: uncharacterized protein LOC105115900 isoform X1 [Populus euphratica]
2 Hb_002823_020 0.2488973253 - - -
3 Hb_005048_060 0.2505804267 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001638_080 0.2999652997 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
5 Hb_000772_060 0.3053520535 - - conserved hypothetical protein [Ricinus communis]
6 Hb_176052_010 0.3113139323 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_026687_030 0.3132392014 - - hypothetical protein AMTR_s00038p00220080 [Amborella trichopoda]
8 Hb_026687_010 0.3201819761 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Eucalyptus grandis]
9 Hb_003960_020 0.3250759981 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000099_070 0.3279334839 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
11 Hb_001221_460 0.3282466896 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_033834_050 0.3341732992 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000943_060 0.338336562 - - PREDICTED: uncharacterized protein LOC105635589 [Jatropha curcas]
14 Hb_004088_060 0.3385798488 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
15 Hb_002217_460 0.3400407101 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
16 Hb_003891_090 0.341358524 - - -
17 Hb_107500_010 0.3479443951 - - -
18 Hb_005928_050 0.3493853485 - - glutathione reductase [Hevea brasiliensis]
19 Hb_015220_010 0.3525929534 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
20 Hb_062006_010 0.3526365413 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_000787_040 Hb_000787_040 Hb_002823_020 Hb_002823_020 Hb_000787_040--Hb_002823_020 Hb_005048_060 Hb_005048_060 Hb_000787_040--Hb_005048_060 Hb_001638_080 Hb_001638_080 Hb_000787_040--Hb_001638_080 Hb_000772_060 Hb_000772_060 Hb_000787_040--Hb_000772_060 Hb_176052_010 Hb_176052_010 Hb_000787_040--Hb_176052_010 Hb_026687_030 Hb_026687_030 Hb_000787_040--Hb_026687_030 Hb_002823_020--Hb_176052_010 Hb_001221_460 Hb_001221_460 Hb_002823_020--Hb_001221_460 Hb_002823_020--Hb_001638_080 Hb_028271_010 Hb_028271_010 Hb_002823_020--Hb_028271_010 Hb_002823_020--Hb_000772_060 Hb_026687_010 Hb_026687_010 Hb_005048_060--Hb_026687_010 Hb_005048_060--Hb_001638_080 Hb_033834_050 Hb_033834_050 Hb_005048_060--Hb_033834_050 Hb_000943_060 Hb_000943_060 Hb_005048_060--Hb_000943_060 Hb_011628_020 Hb_011628_020 Hb_005048_060--Hb_011628_020 Hb_002007_200 Hb_002007_200 Hb_001638_080--Hb_002007_200 Hb_002272_080 Hb_002272_080 Hb_001638_080--Hb_002272_080 Hb_001183_010 Hb_001183_010 Hb_001638_080--Hb_001183_010 Hb_028487_020 Hb_028487_020 Hb_001638_080--Hb_028487_020 Hb_088753_010 Hb_088753_010 Hb_001638_080--Hb_088753_010 Hb_037767_010 Hb_037767_010 Hb_001638_080--Hb_037767_010 Hb_001703_110 Hb_001703_110 Hb_000772_060--Hb_001703_110 Hb_000868_100 Hb_000868_100 Hb_000772_060--Hb_000868_100 Hb_011077_020 Hb_011077_020 Hb_000772_060--Hb_011077_020 Hb_031527_060 Hb_031527_060 Hb_000772_060--Hb_031527_060 Hb_002571_040 Hb_002571_040 Hb_000772_060--Hb_002571_040 Hb_101733_040 Hb_101733_040 Hb_000772_060--Hb_101733_040 Hb_025771_010 Hb_025771_010 Hb_176052_010--Hb_025771_010 Hb_003579_020 Hb_003579_020 Hb_176052_010--Hb_003579_020 Hb_000326_060 Hb_000326_060 Hb_176052_010--Hb_000326_060 Hb_005568_080 Hb_005568_080 Hb_176052_010--Hb_005568_080 Hb_000879_010 Hb_000879_010 Hb_176052_010--Hb_000879_010 Hb_000914_090 Hb_000914_090 Hb_176052_010--Hb_000914_090 Hb_015220_010 Hb_015220_010 Hb_026687_030--Hb_015220_010 Hb_003960_020 Hb_003960_020 Hb_026687_030--Hb_003960_020 Hb_007254_030 Hb_007254_030 Hb_026687_030--Hb_007254_030 Hb_001401_100 Hb_001401_100 Hb_026687_030--Hb_001401_100 Hb_000084_170 Hb_000084_170 Hb_026687_030--Hb_000084_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.98589 8.65427 0.051372 4.14139 0.806531 0.360491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0739905 16.6956 0.522657 2.80906 0

CAGE analysis