Hb_000787_070

Information

Type -
Description -
Location Contig787: 104538-105872
Sequence    

Annotation

kegg
ID rcu:RCOM_0185000
description Early nodulin 55-2 precursor, putative
nr
ID XP_002522863.1
description Early nodulin 55-2 precursor, putative [Ricinus communis]
swissprot
ID Q5JNJ5
description Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1
trembl
ID B9SA44
description Early nodulin 55-2, putative OS=Ricinus communis GN=RCOM_0185000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58122: 104231-106046
cDNA
(Sanger)
(ID:Location)		 002_A01.ab1: 105254-106044 , 053_J16.ab1: 104500-105282

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_070 0.0 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
2 Hb_005016_130 0.0697186991 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
3 Hb_115919_020 0.079505554 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
4 Hb_006132_060 0.0861750762 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
5 Hb_001102_010 0.0891283143 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
6 Hb_024505_040 0.0894970706 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
7 Hb_000078_030 0.0927063529 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008408_030 0.0965915885 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
9 Hb_000193_230 0.0991547277 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
10 Hb_002298_040 0.1027127141 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
11 Hb_006787_040 0.1032894383 - - polyadenylate-binding protein, putative [Ricinus communis]
12 Hb_001366_230 0.1057873952 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002221_080 0.1062392625 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
14 Hb_025087_010 0.1064836834 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
15 Hb_004410_010 0.1092831552 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
16 Hb_001722_040 0.1101747219 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
17 Hb_001191_100 0.1113749343 - - F-actin capping protein beta subunit [Populus trichocarpa]
18 Hb_010578_090 0.112345482 - - HEV2.1 [Hevea brasiliensis]
19 Hb_000849_040 0.1128970716 - - transcription factor, putative [Ricinus communis]
20 Hb_183963_020 0.1136730279 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]

Gene co-expression network

sample Hb_000787_070 Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_000787_070--Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_000787_070--Hb_115919_020 Hb_006132_060 Hb_006132_060 Hb_000787_070--Hb_006132_060 Hb_001102_010 Hb_001102_010 Hb_000787_070--Hb_001102_010 Hb_024505_040 Hb_024505_040 Hb_000787_070--Hb_024505_040 Hb_000078_030 Hb_000078_030 Hb_000787_070--Hb_000078_030 Hb_005016_130--Hb_115919_020 Hb_005016_130--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_000284_010 Hb_000284_010 Hb_005016_130--Hb_000284_010 Hb_115919_020--Hb_000284_010 Hb_115919_020--Hb_000078_030 Hb_000193_230 Hb_000193_230 Hb_115919_020--Hb_000193_230 Hb_002298_040 Hb_002298_040 Hb_115919_020--Hb_002298_040 Hb_000345_030 Hb_000345_030 Hb_006132_060--Hb_000345_030 Hb_006132_060--Hb_024505_040 Hb_002387_060 Hb_002387_060 Hb_006132_060--Hb_002387_060 Hb_001584_300 Hb_001584_300 Hb_006132_060--Hb_001584_300 Hb_006132_060--Hb_005016_130 Hb_001102_010--Hb_000078_030 Hb_011457_100 Hb_011457_100 Hb_001102_010--Hb_011457_100 Hb_002835_170 Hb_002835_170 Hb_001102_010--Hb_002835_170 Hb_001102_010--Hb_005016_130 Hb_001102_010--Hb_000193_230 Hb_001514_180 Hb_001514_180 Hb_024505_040--Hb_001514_180 Hb_000849_040 Hb_000849_040 Hb_024505_040--Hb_000849_040 Hb_024505_040--Hb_005016_130 Hb_000041_070 Hb_000041_070 Hb_024505_040--Hb_000041_070 Hb_000442_030 Hb_000442_030 Hb_024505_040--Hb_000442_030 Hb_000078_030--Hb_000193_230 Hb_000078_030--Hb_000284_010 Hb_000078_030--Hb_002298_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
976.417 27.3079 15.9958 133.051 928.472 925.936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1582.71 1174.46 969.79 99.9484 17.4995

CAGE analysis