Hb_000787_100

Information

Type -
Description -
Location Contig787: 131072-133006
Sequence    

Annotation

kegg
ID rcu:RCOM_0184550
description electron transfer flavoprotein-ubiquinone oxidoreductase, putative
nr
ID XP_012070751.1
description PREDICTED: thiamine thiazole synthase, chloroplastic [Jatropha curcas]
swissprot
ID F6H7K5
description Thiamine thiazole synthase 2, chloroplastic OS=Vitis vinifera GN=THI1-2 PE=3 SV=1
trembl
ID A0A067KS68
description Thiamine thiazole synthase, chloroplastic OS=Jatropha curcas GN=THI1 PE=3 SV=1
Gene Ontology
ID GO:0005829
description thiamine thiazole synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58129: 131067-132882
cDNA
(Sanger)
(ID:Location)		 001_I24.ab1: 131190-131712 , 002_N07.ab1: 131811-132752 , 006_B23.ab1: 131907-132752 , 010_H17.ab1: 131809-132752 , 012_A07.ab1: 131981-132882 , 012_H08.ab1: 131837-132752 , 012_P18.ab1: 131855-132752 , 015_C18.ab1: 131872-132752 , 016_C05.ab1: 131870-132752 , 021_I19.ab1: 131864-132752 , 030_N12.ab1: 131934-132882 , 032_A04.ab1: 131844-132752 , 036_E24.ab1: 131809-132752 , 037_K04.ab1: 131810-132752 , 039_L17.ab1: 132436-132798 , 048_D24.ab1: 131846-132756 , 051_K20.ab1: 131849-132756

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_100 0.0 - - PREDICTED: thiamine thiazole synthase, chloroplastic [Jatropha curcas]
2 Hb_000890_220 0.1070087636 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
3 Hb_013753_010 0.1145171929 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
4 Hb_002374_150 0.1172063526 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
5 Hb_000331_480 0.1200037697 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
6 Hb_002078_420 0.1200442586 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
7 Hb_012760_200 0.128289455 - - protein phsophatase-2a, putative [Ricinus communis]
8 Hb_101151_020 0.1320230316 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000779_040 0.1358969999 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
10 Hb_153547_010 0.1370666938 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
11 Hb_000211_070 0.1384625795 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
12 Hb_117950_020 0.1397343517 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
13 Hb_004931_040 0.1402307018 - - splicing factor-related family protein [Populus trichocarpa]
14 Hb_001486_120 0.1404402703 - - PREDICTED: importin-5-like [Jatropha curcas]
15 Hb_006275_050 0.1415297174 - - CP3 [Hevea brasiliensis]
16 Hb_002675_190 0.1423732303 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_005122_060 0.1444020186 - - unnamed protein product [Vitis vinifera]
18 Hb_000212_280 0.1460223856 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
19 Hb_001034_020 0.1465850351 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
20 Hb_000016_280 0.1471258851 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]

Gene co-expression network

sample Hb_000787_100 Hb_000787_100 Hb_000890_220 Hb_000890_220 Hb_000787_100--Hb_000890_220 Hb_013753_010 Hb_013753_010 Hb_000787_100--Hb_013753_010 Hb_002374_150 Hb_002374_150 Hb_000787_100--Hb_002374_150 Hb_000331_480 Hb_000331_480 Hb_000787_100--Hb_000331_480 Hb_002078_420 Hb_002078_420 Hb_000787_100--Hb_002078_420 Hb_012760_200 Hb_012760_200 Hb_000787_100--Hb_012760_200 Hb_000779_040 Hb_000779_040 Hb_000890_220--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_000890_220--Hb_000211_090 Hb_000890_220--Hb_013753_010 Hb_000792_110 Hb_000792_110 Hb_000890_220--Hb_000792_110 Hb_101151_020 Hb_101151_020 Hb_000890_220--Hb_101151_020 Hb_000890_220--Hb_012760_200 Hb_004032_350 Hb_004032_350 Hb_013753_010--Hb_004032_350 Hb_013753_010--Hb_012760_200 Hb_013753_010--Hb_101151_020 Hb_013753_010--Hb_000331_480 Hb_025048_040 Hb_025048_040 Hb_013753_010--Hb_025048_040 Hb_000212_280 Hb_000212_280 Hb_002374_150--Hb_000212_280 Hb_000608_340 Hb_000608_340 Hb_002374_150--Hb_000608_340 Hb_001486_120 Hb_001486_120 Hb_002374_150--Hb_001486_120 Hb_002374_150--Hb_012760_200 Hb_000573_040 Hb_000573_040 Hb_002374_150--Hb_000573_040 Hb_001582_030 Hb_001582_030 Hb_002374_150--Hb_001582_030 Hb_001034_020 Hb_001034_020 Hb_000331_480--Hb_001034_020 Hb_000331_480--Hb_025048_040 Hb_002675_190 Hb_002675_190 Hb_000331_480--Hb_002675_190 Hb_000331_480--Hb_000212_280 Hb_000331_480--Hb_012760_200 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010 Hb_000029_160 Hb_000029_160 Hb_002078_420--Hb_000029_160 Hb_000172_550 Hb_000172_550 Hb_002078_420--Hb_000172_550 Hb_000016_280 Hb_000016_280 Hb_002078_420--Hb_000016_280 Hb_002078_420--Hb_013753_010 Hb_002078_420--Hb_000331_480 Hb_000076_290 Hb_000076_290 Hb_002078_420--Hb_000076_290 Hb_005028_010 Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_012760_200--Hb_004032_350 Hb_012760_200--Hb_001034_020 Hb_012760_200--Hb_000212_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
636.072 335.036 49.8645 7.23607 730.881 663.591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
198.529 34.6701 165.545 255.445 61.9345

CAGE analysis