Hb_000787_110

Information

Type -
Description -
Location Contig787: 134358-135371
Sequence    

Annotation

kegg
ID fve:101311412
description protein translation factor SUI1 homolog 1-like
nr
ID ADV04053.1
description eukaryotic translation initiation factor 2 [Hevea brasiliensis]
swissprot
ID P41568
description Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=1 SV=2
trembl
ID F8RW95
description Eukaryotic translation initiation factor 2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0003743
description protein translation factor sui1 homolog 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58130: 134407-136807 , PASA_asmbl_58131: 134656-136500
cDNA
(Sanger)
(ID:Location)		 002_K03.ab1: 134445-136568 , 002_M23.ab1: 134433-136552 , 016_N02.ab1: 134453-136570 , 024_A03.ab1: 134558-136563 , 030_C01.ab1: 134486-136574 , 031_H21.ab1: 134444-136570 , 053_F24.ab1: 134451-136571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_110 0.0 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
2 Hb_000188_100 0.0601485399 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
3 Hb_010710_110 0.0779881815 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
4 Hb_000554_020 0.0789016365 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
5 Hb_000406_220 0.0877299053 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
6 Hb_002810_020 0.0914958839 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
7 Hb_001488_330 0.0917262384 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
8 Hb_001720_050 0.0920644494 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
9 Hb_005307_030 0.0925256883 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
10 Hb_001454_140 0.095888797 - - protein arginine n-methyltransferase, putative [Ricinus communis]
11 Hb_000009_550 0.0961188399 - - hypothetical protein RCOM_0603640 [Ricinus communis]
12 Hb_000923_020 0.0963237155 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
13 Hb_003120_060 0.0963567108 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
14 Hb_004195_160 0.0984891553 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
15 Hb_002154_030 0.0985215168 - - RNA binding protein, putative [Ricinus communis]
16 Hb_181235_010 0.0988460341 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
17 Hb_003777_330 0.0991734336 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
18 Hb_001671_020 0.1007842397 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
19 Hb_001030_120 0.1021109403 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
20 Hb_004128_060 0.102293732 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]

Gene co-expression network

sample Hb_000787_110 Hb_000787_110 Hb_000188_100 Hb_000188_100 Hb_000787_110--Hb_000188_100 Hb_010710_110 Hb_010710_110 Hb_000787_110--Hb_010710_110 Hb_000554_020 Hb_000554_020 Hb_000787_110--Hb_000554_020 Hb_000406_220 Hb_000406_220 Hb_000787_110--Hb_000406_220 Hb_002810_020 Hb_002810_020 Hb_000787_110--Hb_002810_020 Hb_001488_330 Hb_001488_330 Hb_000787_110--Hb_001488_330 Hb_003120_060 Hb_003120_060 Hb_000188_100--Hb_003120_060 Hb_000019_230 Hb_000019_230 Hb_000188_100--Hb_000019_230 Hb_003038_030 Hb_003038_030 Hb_000188_100--Hb_003038_030 Hb_079820_010 Hb_079820_010 Hb_000188_100--Hb_079820_010 Hb_000386_040 Hb_000386_040 Hb_000188_100--Hb_000386_040 Hb_000009_550 Hb_000009_550 Hb_010710_110--Hb_000009_550 Hb_005307_030 Hb_005307_030 Hb_010710_110--Hb_005307_030 Hb_004934_090 Hb_004934_090 Hb_010710_110--Hb_004934_090 Hb_000923_020 Hb_000923_020 Hb_010710_110--Hb_000923_020 Hb_001720_050 Hb_001720_050 Hb_010710_110--Hb_001720_050 Hb_000554_020--Hb_000406_220 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_001671_020 Hb_001671_020 Hb_000554_020--Hb_001671_020 Hb_028872_140 Hb_028872_140 Hb_000554_020--Hb_028872_140 Hb_000032_290 Hb_000032_290 Hb_000554_020--Hb_000032_290 Hb_000406_220--Hb_000032_290 Hb_181235_010 Hb_181235_010 Hb_000406_220--Hb_181235_010 Hb_001789_090 Hb_001789_090 Hb_000406_220--Hb_001789_090 Hb_011161_010 Hb_011161_010 Hb_000406_220--Hb_011161_010 Hb_000406_220--Hb_002810_020 Hb_000022_250 Hb_000022_250 Hb_002810_020--Hb_000022_250 Hb_002810_020--Hb_011161_010 Hb_002810_020--Hb_181235_010 Hb_002154_030 Hb_002154_030 Hb_002810_020--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_002810_020--Hb_002477_030 Hb_001488_330--Hb_006332_020 Hb_000977_070 Hb_000977_070 Hb_001488_330--Hb_000977_070 Hb_001488_330--Hb_000022_250 Hb_001488_330--Hb_000554_020 Hb_001488_330--Hb_000032_290 Hb_004600_040 Hb_004600_040 Hb_001488_330--Hb_004600_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1012.2 848.375 194.597 366.913 1171.29 1832.63
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1090.31 1412.41 1328.88 337.905 275.869

CAGE analysis