Hb_000787_140

Information

Type -
Description -
Location Contig787: 167326-171084
Sequence    

Annotation

kegg
ID rcu:RCOM_0183430
description Trafficking protein particle complex subunit, putative
nr
ID XP_002522846.1
description Trafficking protein particle complex subunit, putative [Ricinus communis]
swissprot
ID Q5ZI57
description Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1
trembl
ID B9SA27
description Trafficking protein particle complex subunit, putative OS=Ricinus communis GN=RCOM_0183430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58133: 167264-171046 , PASA_asmbl_58134: 169940-170184
cDNA
(Sanger)
(ID:Location)		 005_F06.ab1: 167264-170917 , 029_G04.ab1: 167325-170661

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_140 0.0 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
2 Hb_000172_030 0.0496078227 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
3 Hb_001437_230 0.0680391609 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
4 Hb_004032_100 0.0712047288 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
5 Hb_000087_020 0.0720761826 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
6 Hb_000024_080 0.0773916336 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
7 Hb_000751_130 0.0831582646 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
8 Hb_180301_010 0.0847499183 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
9 Hb_000024_030 0.0868176266 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
10 Hb_000676_290 0.0909401178 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
11 Hb_000085_320 0.092115532 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
12 Hb_001718_100 0.0922986097 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
13 Hb_005398_030 0.0931971034 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
14 Hb_003927_130 0.0932569873 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
15 Hb_000230_540 0.0942813928 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
16 Hb_000995_040 0.0967436339 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001433_050 0.0978424574 - - 60S ribosomal protein L18, putative [Ricinus communis]
18 Hb_002539_090 0.0980587896 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
19 Hb_004336_050 0.098791544 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
20 Hb_005997_010 0.0990299406 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]

Gene co-expression network

sample Hb_000787_140 Hb_000787_140 Hb_000172_030 Hb_000172_030 Hb_000787_140--Hb_000172_030 Hb_001437_230 Hb_001437_230 Hb_000787_140--Hb_001437_230 Hb_004032_100 Hb_004032_100 Hb_000787_140--Hb_004032_100 Hb_000087_020 Hb_000087_020 Hb_000787_140--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_000787_140--Hb_000024_080 Hb_000751_130 Hb_000751_130 Hb_000787_140--Hb_000751_130 Hb_000172_030--Hb_000751_130 Hb_000172_030--Hb_000087_020 Hb_180301_010 Hb_180301_010 Hb_000172_030--Hb_180301_010 Hb_008544_010 Hb_008544_010 Hb_000172_030--Hb_008544_010 Hb_000172_030--Hb_001437_230 Hb_003927_130 Hb_003927_130 Hb_001437_230--Hb_003927_130 Hb_001437_230--Hb_000751_130 Hb_000085_320 Hb_000085_320 Hb_001437_230--Hb_000085_320 Hb_001258_080 Hb_001258_080 Hb_001437_230--Hb_001258_080 Hb_004032_100--Hb_000024_080 Hb_004032_100--Hb_000087_020 Hb_004032_100--Hb_000751_130 Hb_004032_100--Hb_180301_010 Hb_004032_100--Hb_000085_320 Hb_000087_020--Hb_000024_080 Hb_000444_050 Hb_000444_050 Hb_000087_020--Hb_000444_050 Hb_005398_030 Hb_005398_030 Hb_000087_020--Hb_005398_030 Hb_005997_010 Hb_005997_010 Hb_000087_020--Hb_005997_010 Hb_000087_020--Hb_000751_130 Hb_010180_020 Hb_010180_020 Hb_000024_080--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000024_080--Hb_000676_290 Hb_004128_190 Hb_004128_190 Hb_000024_080--Hb_004128_190 Hb_000024_080--Hb_005398_030 Hb_001829_060 Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.824 25.7295 39.8392 125.414 146.995 261.706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
307.255 303.054 210.744 89.7468 37.4646

CAGE analysis