Hb_000787_150

Information

Type -
Description -
Location Contig787: 172311-172943
Sequence    

Annotation

kegg
ID cit:102630232
description protein NDR1-like
nr
ID XP_012070740.1
description PREDICTED: protein NDR1-like [Jatropha curcas]
swissprot
ID O48915
description Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
trembl
ID A0A067L4N7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00811 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58135: 172169-173098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_150 0.0 - - PREDICTED: protein NDR1-like [Jatropha curcas]
2 Hb_001584_350 0.0690181692 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
3 Hb_000086_500 0.0779604722 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
4 Hb_000174_150 0.0813977292 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
5 Hb_002965_040 0.0849386685 - - drought-responsive family protein [Populus trichocarpa]
6 Hb_000205_130 0.08635025 - - calcium ion binding protein, putative [Ricinus communis]
7 Hb_001258_100 0.0867532996 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
8 Hb_000116_030 0.0908038818 - - PREDICTED: protein GRIP [Jatropha curcas]
9 Hb_002477_250 0.0912499136 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
10 Hb_001674_040 0.0926609058 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
11 Hb_002325_040 0.0930278722 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
12 Hb_003912_040 0.0949502983 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
13 Hb_000034_080 0.095255492 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
14 Hb_003096_060 0.0952699148 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
15 Hb_002483_010 0.0960011375 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
16 Hb_001147_110 0.0965990191 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
17 Hb_005542_050 0.097224443 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
18 Hb_003470_030 0.0973515698 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
19 Hb_000977_300 0.0985391234 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
20 Hb_000238_040 0.1005872959 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]

Gene co-expression network

sample Hb_000787_150 Hb_000787_150 Hb_001584_350 Hb_001584_350 Hb_000787_150--Hb_001584_350 Hb_000086_500 Hb_000086_500 Hb_000787_150--Hb_000086_500 Hb_000174_150 Hb_000174_150 Hb_000787_150--Hb_000174_150 Hb_002965_040 Hb_002965_040 Hb_000787_150--Hb_002965_040 Hb_000205_130 Hb_000205_130 Hb_000787_150--Hb_000205_130 Hb_001258_100 Hb_001258_100 Hb_000787_150--Hb_001258_100 Hb_001723_140 Hb_001723_140 Hb_001584_350--Hb_001723_140 Hb_000529_060 Hb_000529_060 Hb_001584_350--Hb_000529_060 Hb_001171_030 Hb_001171_030 Hb_001584_350--Hb_001171_030 Hb_001584_350--Hb_000174_150 Hb_128548_010 Hb_128548_010 Hb_001584_350--Hb_128548_010 Hb_000977_300 Hb_000977_300 Hb_001584_350--Hb_000977_300 Hb_008062_050 Hb_008062_050 Hb_000086_500--Hb_008062_050 Hb_000086_500--Hb_128548_010 Hb_002483_010 Hb_002483_010 Hb_000086_500--Hb_002483_010 Hb_008568_020 Hb_008568_020 Hb_000086_500--Hb_008568_020 Hb_000086_500--Hb_001584_350 Hb_000645_170 Hb_000645_170 Hb_000086_500--Hb_000645_170 Hb_000174_150--Hb_000977_300 Hb_000139_320 Hb_000139_320 Hb_000174_150--Hb_000139_320 Hb_005288_140 Hb_005288_140 Hb_000174_150--Hb_005288_140 Hb_000174_150--Hb_001171_030 Hb_000340_030 Hb_000340_030 Hb_000174_150--Hb_000340_030 Hb_003096_060 Hb_003096_060 Hb_002965_040--Hb_003096_060 Hb_002965_040--Hb_001258_100 Hb_000227_270 Hb_000227_270 Hb_002965_040--Hb_000227_270 Hb_000494_080 Hb_000494_080 Hb_002965_040--Hb_000494_080 Hb_002965_040--Hb_000205_130 Hb_008387_010 Hb_008387_010 Hb_000205_130--Hb_008387_010 Hb_003912_040 Hb_003912_040 Hb_000205_130--Hb_003912_040 Hb_000205_130--Hb_008568_020 Hb_000205_130--Hb_003096_060 Hb_002615_120 Hb_002615_120 Hb_000205_130--Hb_002615_120 Hb_000525_100 Hb_000525_100 Hb_000205_130--Hb_000525_100 Hb_002893_040 Hb_002893_040 Hb_001258_100--Hb_002893_040 Hb_001258_100--Hb_003912_040 Hb_001225_030 Hb_001225_030 Hb_001258_100--Hb_001225_030 Hb_002413_010 Hb_002413_010 Hb_001258_100--Hb_002413_010 Hb_001258_100--Hb_003096_060 Hb_007062_040 Hb_007062_040 Hb_001258_100--Hb_007062_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.3233 34.3885 32.2443 24.7093 16.1178 21.2683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.854 8.95019 7.75692 20.0965 14.3143

CAGE analysis