Hb_000787_210

Information

Type -
Description -
Location Contig787: 219730-220392
Sequence    

Annotation

kegg
ID rcu:RCOM_0182640
description hypothetical protein
nr
ID XP_002522837.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SA18
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0182640 PE=4 SV=1
Gene Ontology
ID GO:0009570
description chlororespiratory reduction 41

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000103_230 0.081131258 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
3 Hb_020141_030 0.0933143133 - - solanesyl diphosphate synthase, putative [Ricinus communis]
4 Hb_000056_110 0.100778719 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
5 Hb_000208_270 0.1033964992 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
6 Hb_034507_050 0.1082069817 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
7 Hb_001252_030 0.1156803564 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
8 Hb_000007_030 0.1197758144 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000130_140 0.1290622426 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639203 isoform X1 [Jatropha curcas]
10 Hb_022693_080 0.1301878952 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
11 Hb_020400_020 0.1338542991 - - starch synthase isoform II [Manihot esculenta]
12 Hb_000392_210 0.1341798436 transcription factor TF Family: TCP hypothetical protein POPTR_0004s04600g [Populus trichocarpa]
13 Hb_000107_090 0.1380484944 - - PREDICTED: kinesin KP1 [Jatropha curcas]
14 Hb_000538_300 0.1388906642 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
15 Hb_001053_020 0.1395196026 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
16 Hb_024066_040 0.1397194809 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
17 Hb_000237_170 0.1400957203 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
18 Hb_002811_050 0.1409828404 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
19 Hb_000002_300 0.1418456882 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
20 Hb_002636_070 0.1419036107 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]

Gene co-expression network

sample Hb_000787_210 Hb_000787_210 Hb_000103_230 Hb_000103_230 Hb_000787_210--Hb_000103_230 Hb_020141_030 Hb_020141_030 Hb_000787_210--Hb_020141_030 Hb_000056_110 Hb_000056_110 Hb_000787_210--Hb_000056_110 Hb_000208_270 Hb_000208_270 Hb_000787_210--Hb_000208_270 Hb_034507_050 Hb_034507_050 Hb_000787_210--Hb_034507_050 Hb_001252_030 Hb_001252_030 Hb_000787_210--Hb_001252_030 Hb_000103_230--Hb_001252_030 Hb_000103_230--Hb_020141_030 Hb_000130_140 Hb_000130_140 Hb_000103_230--Hb_000130_140 Hb_000237_170 Hb_000237_170 Hb_000103_230--Hb_000237_170 Hb_000103_230--Hb_000208_270 Hb_020141_030--Hb_000208_270 Hb_001541_280 Hb_001541_280 Hb_020141_030--Hb_001541_280 Hb_003018_150 Hb_003018_150 Hb_020141_030--Hb_003018_150 Hb_002814_010 Hb_002814_010 Hb_020141_030--Hb_002814_010 Hb_003058_170 Hb_003058_170 Hb_020141_030--Hb_003058_170 Hb_000056_110--Hb_034507_050 Hb_010174_100 Hb_010174_100 Hb_000056_110--Hb_010174_100 Hb_000056_110--Hb_001252_030 Hb_000056_110--Hb_020141_030 Hb_001677_040 Hb_001677_040 Hb_000056_110--Hb_001677_040 Hb_010098_040 Hb_010098_040 Hb_000208_270--Hb_010098_040 Hb_000538_300 Hb_000538_300 Hb_000208_270--Hb_000538_300 Hb_000966_040 Hb_000966_040 Hb_000208_270--Hb_000966_040 Hb_000208_270--Hb_002814_010 Hb_034507_050--Hb_010174_100 Hb_024066_040 Hb_024066_040 Hb_034507_050--Hb_024066_040 Hb_034507_050--Hb_001252_030 Hb_034507_050--Hb_000103_230 Hb_001053_020 Hb_001053_020 Hb_001252_030--Hb_001053_020 Hb_003849_070 Hb_003849_070 Hb_001252_030--Hb_003849_070 Hb_001252_030--Hb_020141_030 Hb_005977_060 Hb_005977_060 Hb_001252_030--Hb_005977_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.969899 9.73874 14.0432 14.9116 0.723906 2.19834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.611301 0.205938 0.365097 2.99605 33.03

CAGE analysis