Hb_000788_010

Information

Type -
Description -
Location Contig788: 10940-16724
Sequence    

Annotation

kegg
ID cic:CICLE_v10029508mg
description hypothetical protein
nr
ID ADR71283.1
description 40S ribosomal protein S16A [Hevea brasiliensis]
swissprot
ID P46293
description 40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1
trembl
ID I3NMP6
description 40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58161: 16035-16763
cDNA
(Sanger)
(ID:Location)		 007_D15.ab1: 16035-16763 , 012_F08.ab1: 16113-16761 , 012_K10.ab1: 16179-16761 , 025_F04.ab1: 16113-16761 , 035_I24.ab1: 16047-16762 , 036_A10.ab1: 16035-16763 , 036_P15.ab1: 16035-16763 , 044_H17.ab1: 16179-16761 , 045_F02.ab1: 16179-16761 , 049_F14.ab1: 16118-16761 , 049_I13.ab1: 16387-16761 , 050_M02.ab1: 16107-16763

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_010 0.0 - - 40S ribosomal protein S16A [Hevea brasiliensis]
2 Hb_001369_170 0.0606855078 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
3 Hb_006478_160 0.0781218086 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
4 Hb_000576_060 0.086305666 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
5 Hb_000567_410 0.0865325232 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
6 Hb_001085_270 0.0925646753 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
7 Hb_002811_080 0.0979813935 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
8 Hb_008921_020 0.0991964966 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
9 Hb_002235_080 0.0994067638 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
10 Hb_006006_050 0.100642814 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
11 Hb_000735_040 0.1020825526 - - 60S ribosomal protein L32A [Hevea brasiliensis]
12 Hb_000735_090 0.1033646953 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
13 Hb_002909_130 0.1044981552 - - Uncharacterized protein isoform 1 [Theobroma cacao]
14 Hb_006478_150 0.107709984 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
15 Hb_000731_190 0.1078987887 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
16 Hb_000093_110 0.1079679525 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
17 Hb_004543_040 0.1084763297 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_007245_080 0.108513863 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
19 Hb_003929_150 0.108895119 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
20 Hb_011236_010 0.1099805255 - - hypothetical protein JCGZ_17006 [Jatropha curcas]

Gene co-expression network

sample Hb_000788_010 Hb_000788_010 Hb_001369_170 Hb_001369_170 Hb_000788_010--Hb_001369_170 Hb_006478_160 Hb_006478_160 Hb_000788_010--Hb_006478_160 Hb_000576_060 Hb_000576_060 Hb_000788_010--Hb_000576_060 Hb_000567_410 Hb_000567_410 Hb_000788_010--Hb_000567_410 Hb_001085_270 Hb_001085_270 Hb_000788_010--Hb_001085_270 Hb_002811_080 Hb_002811_080 Hb_000788_010--Hb_002811_080 Hb_001369_170--Hb_001085_270 Hb_000302_280 Hb_000302_280 Hb_001369_170--Hb_000302_280 Hb_001369_170--Hb_000567_410 Hb_004543_040 Hb_004543_040 Hb_001369_170--Hb_004543_040 Hb_006478_150 Hb_006478_150 Hb_001369_170--Hb_006478_150 Hb_006478_160--Hb_000567_410 Hb_000731_190 Hb_000731_190 Hb_006478_160--Hb_000731_190 Hb_000093_110 Hb_000093_110 Hb_006478_160--Hb_000093_110 Hb_000735_040 Hb_000735_040 Hb_006478_160--Hb_000735_040 Hb_008921_020 Hb_008921_020 Hb_006478_160--Hb_008921_020 Hb_000576_060--Hb_008921_020 Hb_000576_060--Hb_000735_040 Hb_001789_050 Hb_001789_050 Hb_000576_060--Hb_001789_050 Hb_000062_650 Hb_000062_650 Hb_000576_060--Hb_000062_650 Hb_001141_140 Hb_001141_140 Hb_000576_060--Hb_001141_140 Hb_000567_410--Hb_001085_270 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_000061_130 Hb_000061_130 Hb_001085_270--Hb_000061_130 Hb_002909_130 Hb_002909_130 Hb_001085_270--Hb_002909_130 Hb_172221_010 Hb_172221_010 Hb_001085_270--Hb_172221_010 Hb_000193_120 Hb_000193_120 Hb_001085_270--Hb_000193_120 Hb_000331_700 Hb_000331_700 Hb_002811_080--Hb_000331_700 Hb_000975_320 Hb_000975_320 Hb_002811_080--Hb_000975_320 Hb_002588_010 Hb_002588_010 Hb_002811_080--Hb_002588_010 Hb_000330_070 Hb_000330_070 Hb_002811_080--Hb_000330_070 Hb_011311_010 Hb_011311_010 Hb_002811_080--Hb_011311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2504 11.1186 18.7232 19.1341 12.5204 14.8527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7257 101.26 30.9409 27.3348 12.9204

CAGE analysis