Hb_000788_020

Information

Type -
Description -
Location Contig788: 19567-28740
Sequence    

Annotation

kegg
ID rcu:RCOM_0497340
description hypothetical protein
nr
ID XP_012066733.1
description PREDICTED: uncharacterized protein LOC105629709 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1Y5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00288 PE=4 SV=1
Gene Ontology
ID GO:0016746
description acyl- n-acyltransferase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58162: 19640-28787 , PASA_asmbl_58163: 19640-28787 , PASA_asmbl_58164: 19638-28720 , PASA_asmbl_58165: 19638-21641
cDNA
(Sanger)
(ID:Location)		 034_H24.ab1: 19640-24526

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_020 0.0 - - PREDICTED: uncharacterized protein LOC105629709 isoform X1 [Jatropha curcas]
2 Hb_055619_010 0.1166181508 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
3 Hb_002811_010 0.127608418 - - cysteine synthase, putative [Ricinus communis]
4 Hb_012627_040 0.1347682278 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
5 Hb_000120_290 0.1375192012 - - PREDICTED: N-acylphosphatidylethanolamine synthase isoform X1 [Jatropha curcas]
6 Hb_007534_050 0.1388087542 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_005731_160 0.1424794604 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000028_110 0.1495649887 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
9 Hb_029920_030 0.1510566651 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
10 Hb_003734_110 0.1531232132 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
11 Hb_000008_350 0.1560086037 - - -
12 Hb_000164_140 0.1566725222 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_000107_570 0.1593105965 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
14 Hb_099136_010 0.1600373257 - - PREDICTED: cysteine synthase-like isoform X3 [Cucumis sativus]
15 Hb_003544_010 0.1621236958 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000622_240 0.1628119349 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
17 Hb_000914_100 0.1639539337 - - unknown [Glycine max]
18 Hb_002304_080 0.1645263365 - - PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]
19 Hb_001712_020 0.1652109219 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
20 Hb_001195_450 0.166015702 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]

Gene co-expression network

sample Hb_000788_020 Hb_000788_020 Hb_055619_010 Hb_055619_010 Hb_000788_020--Hb_055619_010 Hb_002811_010 Hb_002811_010 Hb_000788_020--Hb_002811_010 Hb_012627_040 Hb_012627_040 Hb_000788_020--Hb_012627_040 Hb_000120_290 Hb_000120_290 Hb_000788_020--Hb_000120_290 Hb_007534_050 Hb_007534_050 Hb_000788_020--Hb_007534_050 Hb_005731_160 Hb_005731_160 Hb_000788_020--Hb_005731_160 Hb_055619_010--Hb_002811_010 Hb_055619_010--Hb_005731_160 Hb_055619_010--Hb_007534_050 Hb_001578_020 Hb_001578_020 Hb_055619_010--Hb_001578_020 Hb_004440_060 Hb_004440_060 Hb_055619_010--Hb_004440_060 Hb_004644_030 Hb_004644_030 Hb_055619_010--Hb_004644_030 Hb_002811_010--Hb_005731_160 Hb_003106_190 Hb_003106_190 Hb_002811_010--Hb_003106_190 Hb_000613_110 Hb_000613_110 Hb_002811_010--Hb_000613_110 Hb_002811_010--Hb_000120_290 Hb_000077_150 Hb_000077_150 Hb_002811_010--Hb_000077_150 Hb_012627_040--Hb_000120_290 Hb_012627_040--Hb_005731_160 Hb_012627_040--Hb_002811_010 Hb_000282_080 Hb_000282_080 Hb_012627_040--Hb_000282_080 Hb_002758_010 Hb_002758_010 Hb_012627_040--Hb_002758_010 Hb_000465_190 Hb_000465_190 Hb_012627_040--Hb_000465_190 Hb_000120_290--Hb_005731_160 Hb_002811_130 Hb_002811_130 Hb_000120_290--Hb_002811_130 Hb_003376_230 Hb_003376_230 Hb_000120_290--Hb_003376_230 Hb_000120_290--Hb_000465_190 Hb_007534_050--Hb_004440_060 Hb_005127_030 Hb_005127_030 Hb_007534_050--Hb_005127_030 Hb_007534_050--Hb_001578_020 Hb_007534_050--Hb_002811_010 Hb_000317_260 Hb_000317_260 Hb_007534_050--Hb_000317_260 Hb_005731_160--Hb_000613_110 Hb_005731_160--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_005731_160--Hb_000130_320 Hb_000648_040 Hb_000648_040 Hb_005731_160--Hb_000648_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.02093 4.56644 12.5278 12.2873 5.0673 9.78773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4951 10.1519 7.51066 11.5928 35.6588

CAGE analysis