Hb_000788_060

Information

Type -
Description -
Location Contig788: 60489-63598
Sequence    

Annotation

kegg
ID pop:POPTR_0003s00960g
description hypothetical protein
nr
ID XP_012066729.1
description PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5H0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00285 PE=4 SV=1
Gene Ontology
ID GO:0005739
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58170: 62999-63288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_060 0.0 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
2 Hb_001242_050 0.1072775936 - - conserved hypothetical protein [Ricinus communis]
3 Hb_075247_010 0.1393522014 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
4 Hb_000465_270 0.1432646168 - - conserved hypothetical protein [Ricinus communis]
5 Hb_023344_080 0.1439189288 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
6 Hb_002863_030 0.1444490279 - - unknown [Populus trichocarpa x Populus deltoides]
7 Hb_001486_010 0.1512206309 - - adenylsulfate kinase, putative [Ricinus communis]
8 Hb_000211_030 0.1637552409 - - sugar transporter, putative [Ricinus communis]
9 Hb_005356_040 0.1680290856 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
10 Hb_008643_200 0.1728197141 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera]
11 Hb_002249_070 0.174223347 - - gcn4-complementing protein, putative [Ricinus communis]
12 Hb_004800_100 0.1753930238 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005074_030 0.178129715 - - -
14 Hb_005686_050 0.180065073 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
15 Hb_001504_330 0.180462887 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
16 Hb_158092_010 0.1808093397 - - CYP51 [Hevea brasiliensis]
17 Hb_001123_210 0.1822358477 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
18 Hb_007926_050 0.1838721028 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
19 Hb_009486_020 0.1842366255 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
20 Hb_000608_050 0.1852476513 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000788_060 Hb_000788_060 Hb_001242_050 Hb_001242_050 Hb_000788_060--Hb_001242_050 Hb_075247_010 Hb_075247_010 Hb_000788_060--Hb_075247_010 Hb_000465_270 Hb_000465_270 Hb_000788_060--Hb_000465_270 Hb_023344_080 Hb_023344_080 Hb_000788_060--Hb_023344_080 Hb_002863_030 Hb_002863_030 Hb_000788_060--Hb_002863_030 Hb_001486_010 Hb_001486_010 Hb_000788_060--Hb_001486_010 Hb_001377_420 Hb_001377_420 Hb_001242_050--Hb_001377_420 Hb_005496_090 Hb_005496_090 Hb_001242_050--Hb_005496_090 Hb_001242_050--Hb_000465_270 Hb_001242_050--Hb_075247_010 Hb_158092_010 Hb_158092_010 Hb_001242_050--Hb_158092_010 Hb_004800_100 Hb_004800_100 Hb_075247_010--Hb_004800_100 Hb_075247_010--Hb_000465_270 Hb_004627_030 Hb_004627_030 Hb_075247_010--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_075247_010--Hb_012305_130 Hb_000252_100 Hb_000252_100 Hb_075247_010--Hb_000252_100 Hb_005356_040 Hb_005356_040 Hb_000465_270--Hb_005356_040 Hb_000465_270--Hb_004627_030 Hb_000928_110 Hb_000928_110 Hb_000465_270--Hb_000928_110 Hb_000465_270--Hb_004800_100 Hb_126757_010 Hb_126757_010 Hb_000465_270--Hb_126757_010 Hb_001856_200 Hb_001856_200 Hb_023344_080--Hb_001856_200 Hb_006909_060 Hb_006909_060 Hb_023344_080--Hb_006909_060 Hb_000987_060 Hb_000987_060 Hb_023344_080--Hb_000987_060 Hb_001619_040 Hb_001619_040 Hb_023344_080--Hb_001619_040 Hb_000239_020 Hb_000239_020 Hb_023344_080--Hb_000239_020 Hb_002681_200 Hb_002681_200 Hb_002863_030--Hb_002681_200 Hb_000608_050 Hb_000608_050 Hb_002863_030--Hb_000608_050 Hb_000803_200 Hb_000803_200 Hb_002863_030--Hb_000803_200 Hb_000849_130 Hb_000849_130 Hb_002863_030--Hb_000849_130 Hb_002301_160 Hb_002301_160 Hb_002863_030--Hb_002301_160 Hb_000392_340 Hb_000392_340 Hb_002863_030--Hb_000392_340 Hb_001486_010--Hb_075247_010 Hb_001486_010--Hb_000239_020 Hb_009111_020 Hb_009111_020 Hb_001486_010--Hb_009111_020 Hb_001221_330 Hb_001221_330 Hb_001486_010--Hb_001221_330 Hb_007262_030 Hb_007262_030 Hb_001486_010--Hb_007262_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.434891 2.47695 1.8945 4.26558 0.31186 0.75503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56916 3.22695 4.84647 1.12331 0.606516

CAGE analysis