Hb_000788_070

Information

Type -
Description -
Location Contig788: 64333-69986
Sequence    

Annotation

kegg
ID rcu:RCOM_0525150
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012066728.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
swissprot
ID Q9SY69
description Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GN=GRP23 PE=1 SV=1
trembl
ID A0A067L223
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00284 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58173: 64594-65177 , PASA_asmbl_58174: 65224-67259 , PASA_asmbl_58176: 69374-69475 , PASA_asmbl_58177: 70555-77151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
2 Hb_002784_110 0.0634618416 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
3 Hb_005496_110 0.0687864947 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
4 Hb_000265_230 0.069138093 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
5 Hb_000025_710 0.0718215505 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
6 Hb_000183_020 0.0784471179 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
7 Hb_028487_010 0.0786744892 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
8 Hb_000740_100 0.0792945398 - - calpain, putative [Ricinus communis]
9 Hb_002784_010 0.0803536821 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
10 Hb_001655_060 0.0829667997 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
11 Hb_000406_020 0.0837573982 - - -
12 Hb_001821_090 0.0867429994 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
13 Hb_001191_120 0.087094941 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
14 Hb_188063_010 0.0873645309 - - hypothetical protein RCOM_1469330 [Ricinus communis]
15 Hb_000170_150 0.0873857842 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
16 Hb_006295_020 0.0882419409 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
17 Hb_007576_120 0.0886143373 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
18 Hb_011173_030 0.0887852856 - - pumilio, putative [Ricinus communis]
19 Hb_000579_230 0.0889609815 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
20 Hb_003058_060 0.0891477069 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000788_070 Hb_000788_070 Hb_002784_110 Hb_002784_110 Hb_000788_070--Hb_002784_110 Hb_005496_110 Hb_005496_110 Hb_000788_070--Hb_005496_110 Hb_000265_230 Hb_000265_230 Hb_000788_070--Hb_000265_230 Hb_000025_710 Hb_000025_710 Hb_000788_070--Hb_000025_710 Hb_000183_020 Hb_000183_020 Hb_000788_070--Hb_000183_020 Hb_028487_010 Hb_028487_010 Hb_000788_070--Hb_028487_010 Hb_000446_120 Hb_000446_120 Hb_002784_110--Hb_000446_120 Hb_025194_040 Hb_025194_040 Hb_002784_110--Hb_025194_040 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_000035_290 Hb_000035_290 Hb_002784_110--Hb_000035_290 Hb_002784_110--Hb_000183_020 Hb_005496_110--Hb_000035_290 Hb_004108_100 Hb_004108_100 Hb_005496_110--Hb_004108_100 Hb_001080_230 Hb_001080_230 Hb_005496_110--Hb_001080_230 Hb_000170_150 Hb_000170_150 Hb_005496_110--Hb_000170_150 Hb_005496_110--Hb_002784_110 Hb_018118_010 Hb_018118_010 Hb_000265_230--Hb_018118_010 Hb_006816_430 Hb_006816_430 Hb_000265_230--Hb_006816_430 Hb_001191_120 Hb_001191_120 Hb_000265_230--Hb_001191_120 Hb_000265_230--Hb_000025_710 Hb_003203_030 Hb_003203_030 Hb_000265_230--Hb_003203_030 Hb_188063_010 Hb_188063_010 Hb_000025_710--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_002329_040 Hb_002329_040 Hb_000183_020--Hb_002329_040 Hb_003044_020 Hb_003044_020 Hb_000183_020--Hb_003044_020 Hb_001195_320 Hb_001195_320 Hb_000183_020--Hb_001195_320 Hb_003362_070 Hb_003362_070 Hb_000183_020--Hb_003362_070 Hb_000166_130 Hb_000166_130 Hb_000183_020--Hb_000166_130 Hb_000922_370 Hb_000922_370 Hb_000183_020--Hb_000922_370 Hb_000307_210 Hb_000307_210 Hb_028487_010--Hb_000307_210 Hb_011173_030 Hb_011173_030 Hb_028487_010--Hb_011173_030 Hb_001821_090 Hb_001821_090 Hb_028487_010--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_028487_010--Hb_002107_070 Hb_000740_100 Hb_000740_100 Hb_028487_010--Hb_000740_100 Hb_005143_030 Hb_005143_030 Hb_028487_010--Hb_005143_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1715 16.7548 6.0728 4.9595 12.7008 17.1408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.13387 6.31576 7.00525 14.8112 14.2319

CAGE analysis