Hb_000788_080

Information

Type -
Description -
Location Contig788: 70548-77164
Sequence    

Annotation

kegg
ID rcu:RCOM_0619440
description hypothetical protein
nr
ID XP_012066726.1
description PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SS97
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0619440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58177: 70555-77151 , PASA_asmbl_58178: 75254-76682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_080 0.0 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
2 Hb_003095_070 0.1159519822 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
3 Hb_005000_160 0.1171006345 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
4 Hb_001511_140 0.1196786044 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
5 Hb_000613_160 0.1206280657 - - coated vesicle membrane protein, putative [Ricinus communis]
6 Hb_001159_200 0.1218864683 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
7 Hb_009838_040 0.1232649062 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
8 Hb_001276_060 0.1288062744 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
9 Hb_000111_010 0.1334910579 - - DNA-directed RNA polymerase, putative [Ricinus communis]
10 Hb_000784_030 0.1405156468 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
11 Hb_001102_250 0.1454384307 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
12 Hb_002759_240 0.146024879 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
13 Hb_000318_490 0.1485541037 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
14 Hb_002704_050 0.1487620169 - - cysteine-type peptidase, putative [Ricinus communis]
15 Hb_001507_070 0.1495739138 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003371_100 0.1500171088 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
17 Hb_011671_400 0.1523539519 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
18 Hb_001258_140 0.1530219234 - - -
19 Hb_012053_040 0.1533348959 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
20 Hb_000367_280 0.1539689809 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000788_080 Hb_000788_080 Hb_003095_070 Hb_003095_070 Hb_000788_080--Hb_003095_070 Hb_005000_160 Hb_005000_160 Hb_000788_080--Hb_005000_160 Hb_001511_140 Hb_001511_140 Hb_000788_080--Hb_001511_140 Hb_000613_160 Hb_000613_160 Hb_000788_080--Hb_000613_160 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_009838_040 Hb_009838_040 Hb_000788_080--Hb_009838_040 Hb_001102_250 Hb_001102_250 Hb_003095_070--Hb_001102_250 Hb_001276_060 Hb_001276_060 Hb_003095_070--Hb_001276_060 Hb_005908_040 Hb_005908_040 Hb_003095_070--Hb_005908_040 Hb_011671_400 Hb_011671_400 Hb_003095_070--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003095_070--Hb_072912_020 Hb_003371_100 Hb_003371_100 Hb_005000_160--Hb_003371_100 Hb_005000_160--Hb_001276_060 Hb_005000_160--Hb_009838_040 Hb_005000_160--Hb_011671_400 Hb_005000_160--Hb_000613_160 Hb_001776_170 Hb_001776_170 Hb_001511_140--Hb_001776_170 Hb_000979_250 Hb_000979_250 Hb_001511_140--Hb_000979_250 Hb_012053_040 Hb_012053_040 Hb_001511_140--Hb_012053_040 Hb_002759_240 Hb_002759_240 Hb_001511_140--Hb_002759_240 Hb_000592_060 Hb_000592_060 Hb_001511_140--Hb_000592_060 Hb_001507_070 Hb_001507_070 Hb_000613_160--Hb_001507_070 Hb_002704_050 Hb_002704_050 Hb_000613_160--Hb_002704_050 Hb_000613_160--Hb_001276_060 Hb_000613_160--Hb_000979_250 Hb_001369_400 Hb_001369_400 Hb_001159_200--Hb_001369_400 Hb_000281_230 Hb_000281_230 Hb_001159_200--Hb_000281_230 Hb_002876_370 Hb_002876_370 Hb_001159_200--Hb_002876_370 Hb_000318_490 Hb_000318_490 Hb_001159_200--Hb_000318_490 Hb_001863_420 Hb_001863_420 Hb_001159_200--Hb_001863_420 Hb_000215_180 Hb_000215_180 Hb_009838_040--Hb_000215_180 Hb_012239_100 Hb_012239_100 Hb_009838_040--Hb_012239_100 Hb_001258_140 Hb_001258_140 Hb_009838_040--Hb_001258_140 Hb_000106_100 Hb_000106_100 Hb_009838_040--Hb_000106_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.54043 1.1288 1.12974 2.81182 2.73888 4.72105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.967 61.865 55.9404 5.25501 3.61616

CAGE analysis